Ficedula albicollis (collared flycatcher): 101809963
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Entry
101809963 CDS
T02815
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specific factor 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03015
mRNA surveillance pathway
fab03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101809963 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101809963 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fab03019
]
101809963 (CPSF6)
Messenger RNA biogenesis [BR:
fab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
101809963 (CPSF6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
101809963
NCBI-ProteinID:
XP_005039946
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Position
1A:35480670..35512033
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AA seq
633 aa
AA seq
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MRRGGRRPLPAGGAGEALPLFADESKSRRAVADSRPRFAGEAELVPLYSVALEKGVFFCV
FICVTHPRKIAEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSVGDDVGKGAA
PNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALV
GVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPP
GGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGP
PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGP
PPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPANSG
IPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGRHTKNNTQNS
GREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQS
KVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHD
DYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggggagggcggcggcctcttcccgccggcggcgcaggggaagcgctgccattg
ttcgcagatgaatcaaaaagccgccgagcggtggctgattctcggccgcgcttcgcgggg
gaggcggaactagtgccgctttattctgtagcactggagaaaggggttttcttctgtgtt
tttatctgtgtcacacacccccgaaaaattgctgaggctgaatatggtgggcatgatcag
attgatttatatgacgatgtaatttctccatctgcaaataatggagatgctccagaggat
cgtgattacatggattctcttccaccatctgttggggatgatgtaggtaaaggagctgca
ccaaatgttgtctatacgtatactggaaagagaattgccttgtacattggaaatctcact
tggtggacaacagatgaagacttaactgaagcagttcattcactgggggtaaatgacatt
ttggagataaaatttttcgaaaatcgtgctaatggccagtctaaaggatttgcccttgtg
ggtgtgggatcggaagcatcttccaaaaagttgatggatttgttacctaaaagagaattg
catgggcagaatcctgttgtaactccgtgtaataaacagtttctgagtcaatttgaaatg
cagtcaaggaaaaccacacagtctggccagatgtctggggaaggtaaagctggtccccca
ggaggaagctcacgagcagcatttccacctagtaatagaggtcggggccgttttccaggt
gccattccaggtggagacagattccctggaccggcagggccaggagggccaccaccacct
ttcccagctggacaaactcccccacgtccacccttaggtcctcctggcccgccaggccca
ccaggccctccacctcctggtcaggtcctcccacctccattagctggacctcctaatcgt
ggtgatcgtccaccaccaccggttctgtttccaggacagccttttggtcagcctccactc
gggccacttcctccaggccctccaccaccagttccaggctatgggccaccaccaggtcca
ccaccacctcagcaaggtccacctccacctccaggtccatttccccctcgtccgcctggc
cctcttgggccgcccctgactcttgctcctcctccacatctccctgggccaccgccaggt
gctccaccaccagcaccacatgtgaatccagctttcttccccccacctgccaatagtggc
atacccacttcagacagccgtggcccacctccgacagatccgtatggccgacctccacca
tatgacagaggtgactatgggccacctggaaggcgtttcactggaaataacatgtccata
agagaaaaattacatattccattctatgggaggcacacgaaaaataatactcaaaactca
gggagagaaatggatgctgcgaggacacctctaagtgaagcagaatttgaagaaatcatg
aatagaaatagggcgatctcaagcagtgccatttcaagagctgtatcagatgccagtgct
ggggactatggaagtgctatagagaccttggtaactgcaatttccttaatcaaacagtcc
aaagtatctgcagatgatcgctgcaaagtacttattagctctcttcaggactgccttcat
ggaattgagtccaagtcttatggttctggatccagacgtgagcgatccagagagagggac
cacagtaggtcacgagaaaaaagtaggcgccacaaatcacgtagcagagatcgtcacgat
gattattaccgggaaagaagccgtgagagagagaggcatcgtgatcgtgacagagatcgt
gacagagaacgagacagagagagagaatatcgtcaccgttaa
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