Ficedula albicollis (collared flycatcher): 101815210
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Entry
101815210 CDS
T02815
Symbol
COL13A1
Name
(RefSeq) collagen type XIII alpha 1 chain
KO
K16617
collagen type XIII alpha
Organism
fab
Ficedula albicollis (collared flycatcher)
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101815210 (COL13A1)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101815210 (COL13A1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101815210
NCBI-ProteinID:
XP_016154968
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Position
6:1615259..1702056
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AA seq
713 aa
AA seq
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MLEEKSWKGVDEAAFDRGCVAPPRSGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEAGRPAQLPAWLSADQMETAILGRVDQLLNEKLKFHLPRHREVRDTHQRC
NCPAGPPGDKGAMGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPI
GLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHREYLSTTLAALRSNQILTL
KGEQGQAGIQGPPGPPGPPGPAGPAGPEGIPGRPGPVGPPGRAGEPGKPGRDGKGLPGPP
GPKGDAGIQGYPGRKGAPGAAAAGMKGEPGTPGEKGDSGVPGRMGPPGLPGKRGQRGEKG
QAGDPGLPGLPGPKGEKGIAENALVGARGEPGPPGLPGPPGPKGEAGDVGQPGAAGSQGE
KGERGSPGDQGPMGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGRPGVAGPPG
PPGQKGEIGLPGPPGHDGEKGPRGKPGEMGPPGPHGLPGKDGPPGIKGEPGHAGVRGEKG
DKGEPGQAGSPISGPPGPQGPPGPPGVQGVPGPKGEAGIDGVKGEKGAQGEKGDRGPLGL
PGASGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGDPGVAGPMGPAGLPGLQGLPGDKGV
RGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNKGQTPWLIARK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggcgtcgacgaagcagcttttgacagggggtgtgtg
gctccccccaggagcggcgatggggagagatgctgccgcctccccctgctgctgggctcg
gggctgcccggcgtctccctgctctctctggtgctcagcctcctgctgtactttcggacc
tccgacctgcagtcccgcgtgtcccacttggaagcgggcagacccgcacagctccctgcc
tggctctcagcagaccaaatggagacggctattttgggaagagttgaccaactgctcaat
gagaaattgaagttccacttgccaagacatcgagaagttcgagacacgcaccagcgctgc
aactgcccggcaggtccgcctggggacaaaggtgcgatgggaatccctgggcggccggga
ctaaaagggcagtctggagagaagggtgctccaggagaagctggcatgtctatcatcggg
ccccgtgggccccccggccagcctggaacaagaggttttcctggattcccgggccctatt
ggcttggacggcaaaccgggccatcctggacagaagggagagatgggtgctgcaggtccc
aggggacaacctggacccccaggacaaaaaggagagaagggtcagtgcgcagagtacccg
cacagggagtacctaagcaccacactcgcagccctgcgctctaaccagatccttacgctg
aagggtgaacaaggacaagcggggatccaaggtcccccggggccccctggtccaccaggg
cccgctggaccggccggacccgaaggaatcccaggacgtcctgggccagttggaccccct
ggcagagcgggagagcctggaaagcccggcagagatggaaagggcttacctgggcctcct
ggaccaaagggagatgctgggattcaggggtaccctggcagaaagggcgctcccggggcg
gccgccgcagggatgaagggcgagcctgggactccaggagaaaagggagattctggagtg
ccagggaggatgggccccccaggtttgccagggaagagggggcagcggggtgagaaggga
caagctggtgaccctgggcttcctggactccctggcccaaagggagagaagggaattgct
gagaatgccttggtgggagctagaggagaacctggccctccaggtctgcctggaccccct
ggaccaaagggagaagctggtgacgttggtcagcctggtgctgcaggatcacagggagaa
aagggggagcgtggttcaccaggagaccagggacccatgggccccaggggccccaaagga
gagcctgggaaggatgaaatgatggactatgatgggaacatcagtgaagctctgcaggaa
atacgaactttggccttgatgggacccccagggcgtccaggtgtggctggacctccaggg
ccaccaggacagaagggtgaaattggcttgccaggtcctccaggccacgatggagaaaag
ggaccacgtggcaagcctggagaaatgggcccccctggccctcatggactgccaggaaag
gatggaccccctgggataaagggagagccaggccatgctggggtcagaggagaaaagggg
gacaagggagagccaggacaagcaggctcaccgatatctgggccccctggaccccaaggc
cccccaggacctccaggtgttcagggcgttcctggacccaagggggaagcagggattgat
ggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagagggccactgggatta
cccggtgcttcaggtttagacggcaggcctggcccaccgggtattccaggaccaattggg
gtttcgggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagttgca
ggaccaatggggccagcagggcttcctggtttacaaggcctacctggtgacaagggagtc
cggggggagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaagga
gcacctggattagatgcaccctgtccgttgggggaagatggccttccagttcaaggctgc
tggaataagggtcaaactccttggctgatagccagaaagtga
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