Fervidibacillus albus: OE104_07020
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Entry
OE104_07020 CDS
T08860
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
faf
Fervidibacillus albus
Pathway
faf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
faf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OE104_07020 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
faf03400
]
OE104_07020 (ligD)
Enzymes [BR:
faf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OE104_07020 (ligD)
DNA repair and recombination proteins [BR:
faf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OE104_07020 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_A_C
PNKP_ligase
Motif
Other DBs
NCBI-ProteinID:
WAA11048
UniProt:
A0A9E8LWL4
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All DBs
Position
1432082..1433923
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AA seq
613 aa
AA seq
DB search
MRPMLPTLTFSPPMGDEWVYETKYDGFRAFLYLDEKIALMSRNGNSLLSSFPEVNRFVHT
YRSAFASLLPVILDGEITILVNEFKSDFSKVQKRARLKIREKIKEAVEQFPATFLAFDVL
SWQGKNMMEKPYEERKKLLRSFIQTFCNEEMPNVRQDPFVQYVPYENNYFDLWKKVTDAG
GEGIVAKHRKSAWVEGRRSDRWLKVKNWKKVNAFITAFDKKNEYFHIGVYDESGLIRTIG
LFKNGLTGQEREILRKAVKENAQKEDDRFLYIAPGICVELFYLDWYEHKLREPYFSKFLF
ETSPRTCTFQQLIDNHPPYSVTITHPEKRLWSGQRKTKKDYLDYLTNIYPYMAPFLKNRP
LTVIRYPHGIFGEGFFQKNCPDYAPDFVETYEEDGIRFILCNHFNTFIWLGNQLAIEFHI
PFRTIERKNPSEIVIDLDPPTKAEFPLAKEAAMIIKEDIMDKLGLTAFIKVSGKRGLQLY
IPLSTECSFTWEETRMFTKFIADYLVAKDENRFTTERLKINRGNRLYIDYVQHGPGKTII
APFSVRGNEQATVATPIFWKELYGPLEPDGFSMSQVLNRLSNKGNPFETYFQVKNEEPFK
EIVSFFKRNRPLF
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccgatgttaccgacgttaaccttttcaccgccgatgggagatgaatgggtatac
gaaacgaaatatgacggatttcgcgcctttctttatttagatgagaaaatagcattaatg
agtagaaatggaaatagtcttctttcttcttttccagaagtgaatcgatttgttcatacg
tatcgatcggctttcgcttcccttttacccgtcattctcgatggggaaataacgattctc
gtcaacgaatttaaaagcgatttttcaaaggtgcaaaaacgggcaagattaaagatacga
gaaaaaataaaggaggcggtcgaacaatttccagcgactttcctcgcatttgatgtattg
tcatggcagggaaaaaatatgatggaaaaaccgtacgaagaacgaaaaaaacttctacga
tcgtttatccaaacgttttgtaatgaagaaatgccgaatgtccgtcaagatccatttgtg
caatatgttccgtacgaaaataattattttgatttatggaaaaaggtgacagacgctggg
ggagaaggaatcgttgccaaacatcggaaaagtgcttgggtggaaggaaggcggagcgac
cgatggctaaaagttaaaaattggaaaaaagtaaacgccttcattaccgcctttgacaaa
aaaaacgaatattttcatatcggtgtatacgatgagtcaggactaattcgaacaatcggt
ctgtttaaaaacggtttaacggggcaggaaagggaaatattacggaaggcggtgaaagaa
aatgcccaaaaggaggacgatcgttttctatatatcgcccccggaatatgtgtggaacta
ttttatttagattggtacgaacacaaattgcgcgaaccgtacttctctaaatttttattt
gaaacatcccctcgtacttgtacgtttcagcaattaattgacaatcatccgccctattcc
gtaacgattacccacccggagaaacgtctttggagcggacaacgaaagacaaaaaaggat
tatctcgactatttaacgaatatttatccatatatggcaccttttttgaaaaatcgcccg
ttgaccgttattcgctatccccacggaatattcggtgaaggatttttccaaaaaaattgt
cccgattatgctccggactttgttgaaacttatgaagaagacggaattcgatttattctt
tgcaatcacttcaatacgttcatatggcttgggaatcagttagctatcgaattccacatc
ccctttcgaacgattgaaaggaaaaatccatcggaaattgtcatcgatctcgatccgcct
acgaaggctgaatttcctttagcgaaggaagcggcgatgattattaaagaagatattatg
gataagctcggattaacagcctttattaaagtttcagggaaaagggggttgcaattgtac
atccccctttcaaccgagtgttcttttacatgggaggagacgcgcatgtttacaaaattc
atagcggattatttagtggcgaaggacgaaaaccgttttacaacagaacgattgaagata
aatcgaggaaatcgattatatattgactacgttcaacatggtccaggaaaaacgatcatc
gcccccttttcagttaggggaaatgaacaggcgacagttgcaacacctattttttggaaa
gaattgtatgggcctttagaaccggacggattttccatgtcgcaagtattaaatcgacta
tcaaacaagggaaatcctttcgaaacatatttccaagtgaaaaacgaagaaccgttcaag
gaaattgtctcgtttttcaaaaggaatagacccctcttctaa
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