Falsirhodobacter algicola: GR316_03905
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Entry
GR316_03905 CDS
T07373
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fap
Falsirhodobacter algicola
Pathway
fap03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GR316_03905 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fap03400
]
GR316_03905 (ligD)
Enzymes [BR:
fap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GR316_03905 (ligD)
DNA repair and recombination proteins [BR:
fap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GR316_03905 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
SSL_N
Motif
Other DBs
NCBI-ProteinID:
QUS35487
UniProt:
A0A8J8SKK0
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All DBs
Position
768892..771330
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AA seq
812 aa
AA seq
DB search
MDPLDTYRRMRDFAATPEPSGTGGVSAGPALRYGVQMHDATRLHWDLRLEWRGALLSWAV
TRGPSLDPADKRLAVRTEDHPLDYLTFEGTIPKGQYGAGTVMLWDIGWWQPYHDVADGLA
KGHLHFALHGRRAGGGYSLIRMKGKRQGDAKRENWLLIKEDDAAADPEAKHFAAPDARSV
ATNRTLEQIGNNAPALPFGPRRRHAMPAFHEPQLATAVDTPPTGAEWLHEVKLDGYRALI
GLGKDGVRIFTRSGLDWSDRFAELLPPLADLPCDAALIDAEIVAGAGLQGFSALQAAIKA
GGPFQVYAFDLLSLNGASLTGQPLTKRRAALERLLAKAPPRGPVRPSPVLGGAAQDALAA
ICAAGGEGLVSKLAQAPYRSGRGTSWQKTKCIRRAEFLICGWMPSDKRGRTFASLLLATA
EGGGLVYRGKVGTGFDTVAQEDIMARLAPLARKSPPLSAPRAEVRGAKWVDPQLAAEILH
AELTSDGRLRHARFVALREDKAPEDIALDPPVEVQMDHGTRPRIAGIGISHPDRLLFPKP
RITKQALAEYHEAMADRLLPTLKDRPAALLRLPEGLDGERFFQKHPGKGFPDAIRSVRVP
QADGSAADHMCITDTAGLVAAVQMGTVEFHPWGARRDRLDRPERLVFDLDPDEALGFARV
REAALHVRDRLADLGLPSWAMVTGGKGVHVIVPLRRTASWQTAKIFAQLFATLLAEDAPG
AYTASMSKAQRKGRIFVDWLRNERGATAVAPFSVRARPGAPVAVPVAWDELRRLRRANGF
SMKAAQTRSWADLDVPEPAGLNKDVLARLERK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggacccgctggacacctaccgccggatgcgcgacttcgccgcgacgccggagccttcg
ggcacgggtggggtgtccgcggggccagccctgcgctacggcgttcagatgcatgatgca
acgcgcctgcattgggatctgcggctggaatggcgcggcgcccttctgagctgggccgtg
acgcgggggccgtcgctggatccggcagacaaacgccttgccgtgcggaccgaggatcac
cccctcgattacctgaccttcgaagggaccatccccaagggccaatatggcgccggaacc
gtgatgctgtgggatatcggctggtggcagccctatcacgacgtggccgatgggctggcc
aaggggcatctgcatttcgcgctgcatgggcggcgcgcggggggcgggtattccctgatc
cgcatgaagggaaagcggcagggcgatgccaagcgcgagaattggctgttgatcaaggag
gacgatgccgcagcggaccccgaggccaagcatttcgccgcgccggatgcccgcagtgtg
gccacgaaccgcacattggaacagatagggaacaacgccccggccctgcccttcggcccc
agacgtcgccatgcgatgcccgcctttcacgaaccgcaacttgccaccgccgtcgatacg
ccccccacgggtgcggaatggctgcacgaggtgaagctcgatggctatcgcgcgctgatc
ggccttggaaaggacggggtgcgcatcttcacgcgcagcggcctcgattggtcggaccgc
tttgccgaactgctgcccccgctggccgacctgccctgcgatgccgccctgatcgacgcg
gagatcgtggccggtgccggattgcaggggttttccgcattgcaggccgcgatcaaggcg
ggcggtccgtttcaggtctatgccttcgatcttctgtcgctgaacggggcctccctgacc
ggccaaccgctgacgaaacgccgcgcagccttggagcgtcttttggcgaaggctccgccc
cgtgggccggttcgcccgtcgcccgtccttggcggcgcggcacaggacgcgctggccgcc
atctgcgcggcaggcggcgaagggctagtctcgaagctggcgcaggccccctatcgcagc
gggcgcggcacgtcatggcaaaagacgaaatgcatccgccgggcggagttcctgatctgc
ggctggatgccttcggacaaacgcgggcgcaccttcgcctcgctgctcctcgccacggcc
gaagggggcggcctcgtctatcgcggcaaggtcggaacggggttcgacacggtcgcgcag
gaggacatcatggcccgcctcgccccccttgcccgcaaaagcccgcccctcagcgccccg
agggccgaggtgcggggcgcgaaatgggtcgatccgcagcttgcggccgaaatcctgcat
gccgaactgacgagcgatggccgcttgcgccatgcccgcttcgttgccctgcgcgaggac
aaagccccagaagacatcgccctcgatccccccgtggaggttcagatggatcacggcacc
cgcccccggatcgccggcatcggcatcagccacccagaccgcctgctgttccccaaaccc
cgcatcacgaaacaggcccttgccgaatatcacgaggcgatggccgaccgcctccttccc
accctcaaggaccgccccgccgcccttttgcgcctgcccgaggggctggacggggaacgg
ttctttcagaagcatccgggcaagggctttcccgatgccatccgcagcgtccgcgtgccc
caagccgatggaagcgccgccgaccatatgtgcattaccgatacggcggggctcgtggcc
gccgttcagatgggcaccgtggagtttcacccatggggcgcccggcgcgatcggctggac
cggcccgagcggctggtcttcgacctcgaccccgacgaagcgctcggtttcgcccgcgtc
cgcgaggccgcgctgcatgtgcgggaccggctggccgatctggggctgccctcatgggcg
atggtgacggggggcaagggggtgcatgtcatcgttcccctgcgccgcaccgcaagctgg
cagacggcgaagatcttcgcccagcttttcgcgacgcttctggccgaggatgctccgggc
gcctacaccgccagcatgtcgaaggcccagcgcaaggggcggatcttcgtcgactggctg
cggaacgaacgtggggcgacggcggtagcccccttctcggtccgggcacggcccggcgcg
ccggtcgcggtccccgtcgcatgggatgaattgcgtcgtctgcgccgggcgaacgggttt
tcgatgaaggccgcgcaaacgcgcagctgggccgatctggacgtgccggagcctgcgggg
ctgaacaaggacgttctggcgcggctcgaacgaaaatag
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