Flavobacterium gilvum: EM308_07120
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Entry
EM308_07120 CDS
T04609
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fgl
Flavobacterium gilvum
Pathway
fgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EM308_07120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fgl03019
]
EM308_07120
03016 Transfer RNA biogenesis [BR:
fgl03016
]
EM308_07120
Enzymes [BR:
fgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EM308_07120
Messenger RNA biogenesis [BR:
fgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EM308_07120
Transfer RNA biogenesis [BR:
fgl03016
]
Prokaryotic type
tRNA degradation factors
EM308_07120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
Motif
Other DBs
NCBI-ProteinID:
AOW09296
UniProt:
A0A085EJZ5
LinkDB
All DBs
Position
complement(1698004..1700148)
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AA seq
714 aa
AA seq
DB search
MIPIVSKEIIDLGDGRSISIETGKLAKQADGSVVVRLGDCMLLATAVSARTSNPGVDFLP
LTVDYREKFAAAGRFPGGFFKREARPSDSEVLTMRLVDRVLRPLFPDDYHAETQVMIQLM
SHDENVMPDALAGLAASAALAVSDIPFYNLISEVRVARIDGKLVINPSRAELEKSDIDMM
IGASMDSVAMVEGEMKEISEAEMVEAIKFAHEAIKVQIIAQQRLRAAVGSPEYRTYEGEV
EDEAVYAKVKAAAYDKCYAIAQEASGKSERSEKFAAVKEEAKALFTEEEYAENSDLSGLV
GKYFYKTNKEAVRNVILEKGIRLDGRKTTEIRPIWCETDYLPSVHGSSLFTRGETQALAT
VTLGTSREANQIDSPSEQGEEKFYLHYNFPPFSTGEAKPLRGTSRREVGHGNLAQRALKN
MIPADCPYTIRVVSEVLESNGSSSMATVCAGTMALMDAGVQMVKPVSGIAMGLITDGAKF
AVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIDGLRYDIMEQALGQARDGRMHILG
KLTETIATPRPDVKAHAPKIITRTIPGNFIGALIGPGGKVIQELQKATGTTIVINEVDEQ
GVIEILGTNPDGIKAVLAKIDSITFKPQVGEAYEVKVIKMLDFGAVVEYTAAPGNEVLLH
VSELAWERTENVSDVVKMGDVFQVKYFGLDPKTKKEKVSRKALIPRPPREEKKE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgattccaatagtttcaaaagaaattatcgatttgggagatggaagaagcatctcgatc
gaaacaggtaaattagcaaaacaagccgacggttctgttgttgtacgtttaggagattgt
atgttgctcgcaactgctgtatctgcaagaacatcaaatcctggtgttgactttttgcca
ttaaccgtagattaccgtgaaaaatttgccgctgcaggacgtttccctggtggatttttc
aaaagagaagcaagaccaagcgacagcgaagttttaacaatgagattagtagatcgtgtt
ttgcgtcctcttttcccagatgattaccacgcagaaacgcaggtaatgattcaattaatg
tcacatgacgaaaacgttatgccggatgcacttgctggattagcagcatctgcagcattg
gctgtttctgacattccattttacaacttaatttctgaagttcgtgtagcacgtatcgac
gggaaattggttatcaacccaagcagagcagaattagaaaaatcagacatcgacatgatg
attggagcttctatggattctgttgccatggttgaaggtgagatgaaagaaatatcagaa
gccgaaatggttgaagctattaaatttgctcacgaagccatcaaagttcaaattatcgca
caacaacgtctaagagccgctgtaggatctcctgaatacagaacttacgaaggtgaagtt
gaagacgaagctgtttatgccaaagtaaaagctgccgcttatgacaaatgttatgcaatt
gctcaagaagcgtctggaaaaagtgaaagaagcgaaaaatttgctgctgtaaaagaagaa
gcaaaagcgttgtttactgaagaagaatatgccgaaaattcggatttgtctggattagtt
gggaaatatttctacaaaaccaataaagaagctgttcgtaatgtaatccttgagaaaggt
attcgtctagacggaagaaaaacaaccgaaatcagaccaatctggtgtgaaacagattat
ttaccatccgtacacggttcctctttgtttactcgtggagaaactcaagctttggcaact
gtaactttgggaacttctagagaagcaaaccaaatcgattcaccatcagaacaaggagaa
gaaaaattctacttacactataacttccctcctttctcgactggtgaagcaaaaccatta
agaggaacatcaagaagagaagtaggacatggtaacttggcgcaacgtgccttaaaaaat
atgattcctgccgattgtccttatacaattcgtgttgtttctgaagtattggaatctaac
ggttcttcctctatggcaacagtttgtgccggaacaatggcgcttatggatgcgggagtt
caaatggtgaaacctgtttctggaatcgctatgggattaattactgacggagcaaaattc
gctgtattgtcagacatcttaggagacgaagatcacttaggagacatggactttaaagta
accggaactgctgacggtattactgcttgtcaaatggatatcaaaattgacggattgcgc
tatgatattatggagcaagctctaggtcaggctcgtgacggacgtatgcatattttagga
aaattgactgaaacgattgcaactccaagaccagacgttaaagctcatgcaccaaaaatc
attactagaacaattcctggcaactttattggagcgctgattggacctggtggaaaagta
attcaagaattgcaaaaagctactggaactactatcgttatcaatgaagtggatgaacaa
ggagttatcgaaattctaggtactaatccagatggaatcaaagctgtattggctaaaatt
gactctattactttcaaaccacaagttggagaagcatacgaagtaaaagtaatcaaaatg
cttgattttggagcagtcgtagaatatacagcagcaccaggaaatgaagtattgcttcac
gtatcagaactagcttgggaacgtacagaaaacgtttctgacgtagtgaaaatgggagat
gttttccaagtgaaatactttggtcttgatccaaaaaccaaaaaagagaaggtatcaaga
aaagcacttatcccaagacctccgcgtgaggagaaaaaagagtaa
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