Fervidibacillus halotolerans: OE105_04015
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Entry
OE105_04015 CDS
T08855
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fhl
Fervidibacillus halotolerans
Pathway
fhl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OE105_04015 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fhl03400
]
OE105_04015 (ligD)
Enzymes [BR:
fhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OE105_04015 (ligD)
DNA repair and recombination proteins [BR:
fhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OE105_04015 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WAA13879
UniProt:
A0A9E8M249
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All DBs
Position
complement(847667..849502)
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AA seq
611 aa
AA seq
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MLPTITFNPPIGNQWVYETKYDGFRALLYLDENVQFISRNGKDLLPSFPEVNDFFKKYRN
KFASLLPVILDGELTILVNPYKSDFSKVQRRGRLKKKENIQFAIKEDPATYLAFDLLEWK
GTNIQNKPYVERKKLLQSFIRTFSKFEKPIVRRDPFIQMIPYEKDFNILWQKILAYGGEG
IVAKQIDSSWRRGIRSNEWVKLKNWQKINVFITAYDQTNGYFHVGVYDELGAIRPVGLFK
NGLTKKEKESLEKVVKANAQLKKDRLLYINPSICVELLYLEWYENKLREPYFSKFLFHTS
PKSCTFKQILEKSQPVQVEITHPNKRLWKNEPGRKKDYIDYLRKIYPYMSPFLKNRVLTV
IRYPHGMFGEAFFQKNCPTYAPNFVETYEEKGIRYILCNNVHTLIWLGNQLAIEFHIPFR
SIERKHPSELVIDLDPPSKAEFHLAVEAASIIKEDIIDPLGLTAFLKVSGKRGLHLYIPF
SSTSPFTWEDTRMFAHFIANYLATKKDSYFTTERLKKLRRNRLYIDYVQYGEGKTIIAPF
SVRGNEKASVAAPIFWEELHKPLVPDGFSMPTVLNRLSTVGNPFKGYFQTNNDQPIKEIL
SFLQRNTKSFQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgactataactttcaatcctccaattggaaaccaatgggtatatgaaacgaaa
tacgatgggtttcgtgccctgttatatttggatgaaaacgtacaattcattagcagaaat
ggaaaggatctcctcccctcatttccagaggtgaatgatttttttaaaaaataccgaaac
aaattcgcttccctcttacctgtaatcctagatggtgaattaacgattcttgtcaatcca
tataaaagtgatttttcaaaggttcaaagacgcggccgattgaagaaaaaagaaaacatt
caattcgctataaaggaagatcccgccacttaccttgcttttgatttacttgaatggaaa
ggaacaaacatacagaacaaaccgtatgtggaacgaaaaaagctgcttcaatcctttatt
cggaccttttccaaatttgaaaaaccgatcgtccgaagggatccctttattcaaatgatt
ccatatgaaaaggattttaacatcttgtggcaaaaaattttagcctatggtggagagggg
atcgttgccaaacagatagatagtagctggagacgaggaatcagatcaaacgaatgggta
aagttgaaaaattggcagaaaataaatgtttttattaccgcttatgatcaaaccaatgga
tattttcatgtgggtgtttacgatgagctaggtgcaatccgaccggtcggactattcaaa
aacggattaacaaagaaagagaaggaatcattggaaaaagtggtgaaagccaatgcccaa
ttaaaaaaggatcggcttctttatatcaacccgagcatatgtgttgagttactttattta
gaatggtacgaaaacaaattaagagaaccgtatttttccaagtttttgtttcatacttcg
ccaaaatcctgtacctttaaacaaattttagaaaagagccaacccgtacaagtggaaatt
acccatccaaataagcgattatggaaaaatgaacccggacgaaaaaaagattatattgac
tacttaaggaaaatatatccgtacatgtccccttttttaaaaaaccgagtgttaaccgtg
atccgctatccccacggaatgttcggtgaagctttttttcaaaaaaattgtccaacatac
gctccaaactttgtagaaacttacgaagaaaagggcattcggtatattctatgcaataat
gtgcatacattaatttggctcgggaatcagttggcgattgaatttcatattccctttcga
tcgattgaaagaaaacatccttccgaattagtaatcgatctcgatccaccatcaaaagcc
gaattccacttggcagtcgaagccgcctctataataaaagaggacatcatagatccactc
ggattaacggcgtttttaaaagtttctggaaaaaggggattgcatttgtatatccctttt
tctagtacgtctccatttacttgggaagatacccgtatgtttgcacattttatagctaat
tatttagccacaaaaaaggattcatattttacaacggaacgtctgaagaaactacggcgt
aatcggctatatatcgattatgtgcaatacggagagggaaaaacgataatcgctcccttt
tcggtacggggaaacgaaaaggcgagtgtcgctgcaccaattttttgggaagagttacat
aaacccttggttcccgatggattttccatgccaactgtgctgaatcgcctttcaactgtc
ggaaatccctttaagggctatttccaaacaaataatgaccaaccgataaaggagattctt
tcatttttacaaagaaatacaaaatcatttcagtaa
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