Flavobacterium indicum: KQS_13160
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Entry
KQS_13160 CDS
T01781
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
fin
Flavobacterium indicum
Pathway
fin02020
Two-component system
fin02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fin00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KQS_13160 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KQS_13160 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fin03021
]
KQS_13160 (rpoN)
Transcription machinery [BR:
fin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KQS_13160 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
RIH_assoc
MarR
HTH_Crp_2
Crp
SF3b1
DUF3015
Motif
Other DBs
NCBI-ProteinID:
CCG54529
UniProt:
H8XRU5
LinkDB
All DBs
Position
complement(2797505..2798908)
Genome browser
AA seq
467 aa
AA seq
DB search
MKLIQLPTQAFEQRLQEEMVENPALEGDVDATLDSYEDSFDNSNDDYDDYDNEHIDTGDL
NIDEYLSNDETPDYKYQTNNYSDDDEEKSLPIAAQMSFHQDLINQLNTFILTDEDREIAE
FLVGSIEDSGYIRRSIQDIVDDMAFTQGIYTDEKTVERILTIVQQLEPSGVGARDLQECL
LIQLKHKTPTDSVSLAIDIIDKQFDAFTKKHYDKLLQKFDVSKEQLKKAIDEIEKLNPKP
GGSFDSSSRVVEHVVPDFTIRVIDGELELTLNSRNAPELHVSKDYQEMLKTYKDSSEKSS
AQKDAVQFIKQKLDSAKWFIDAIKQRQETLMVTMNAIMHFQYEYFLEGEETKLKPMILKD
IADMIGLDISTVSRVANSKYVETPYGTKLIKEFFSEAMKNTEGEDVSTIEIKKILEQVIA
EEDKNKPLPDEDLAVILKERGYPIARRTVAKYREQLDIPVARLRKKI
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgattcaattgcctacgcaagcttttgaacagcgtttgcaagaagaaatggtt
gaaaatccggctttagaaggtgatgtggatgctactttagattcttatgaagattcattt
gataattcaaacgacgattacgacgattacgataacgagcatattgatacaggagattta
aatatcgatgaatatttaagtaatgatgaaactccagattataagtatcaaaccaacaat
tacagtgacgacgacgaagaaaaatcgttgccaattgctgctcaaatgagttttcatcaa
gatttaatcaatcagttgaatacgtttattttaactgatgaagatcgagaaattgctgaa
tttttagtgggtagtattgaagattcgggttatattcgaagaagtattcaagacatcgtt
gacgatatggcttttacacaaggcatatatactgatgaaaaaacggtggaacgcatttta
actatagtgcaacaattagaaccatctggagtgggcgctagggatttgcaagaatgtttg
ttaattcagttaaaacacaaaactcctacggattctgtaagtttagctattgatataata
gataaacagtttgatgcgtttacaaaaaagcattatgataaattgttgcaaaaatttgat
gtttctaaagagcaattgaaaaaagcgattgatgaaattgaaaaattaaatccaaaacca
ggcggaagttttgatagcagcagtagggtagtagagcatgtagtacccgattttacaatt
cgagtaattgatggggaattggaattgactttaaattcgagaaatgctcctgagttacat
gtttcaaaggattaccaagaaatgctaaaaacctacaaagattcaagtgaaaaatcttct
gcgcaaaaagatgctgttcaatttatcaaacaaaaattggattcagccaaatggtttatt
gatgctataaagcaacgtcaagaaacattgatggtaaccatgaatgctatcatgcatttt
caatacgaatattttttagaaggggaagaaacaaagttgaagcctatgattctaaaagat
attgccgatatgatcggtttagatatttctactgtttctcgtgtggcaaatagtaaatat
gttgaaacaccttatggaaccaaactaattaaagaattttttagtgaggccatgaaaaat
actgaaggagaagatgtttcaactattgaaattaagaaaattttagaacaagttattgct
gaagaagataaaaataaacctttacctgatgaagatttagctgtaattctaaaagaacgc
gggtaccctattgcaagaagaacggttgcaaaatacagagaacaattagatattcctgtg
gcgcgtttaagaaagaaaatataa
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