Flavobacterium kingsejongi: FK004_15155
Entry
FK004_15155 CDS
T05683
Definition
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fki
Flavobacterium kingsejongi
Pathway
fki03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FK004_15155
Enzymes [BR:
fki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FK004_15155
DNA repair and recombination proteins [BR:
fki03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FK004_15155
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
Other DBs
NCBI-ProteinID:
AWG26464
UniProt:
A0A2S1LRW0
LinkDB
Position
3329782..3332322
AA seq
846 aa
MKLERYNQKRDFTKTKEPKGVPKKSKNTLQFVVQKHAASHLHYDFRLEIDGVLVSWAVPK
GPSADPADKRLAVMTEDHPMAYLHFEGSIPAGEYGGGTVMVWDTGEYRPEGSEKPADDAR
MMMEQLKSGSIKVVLEGGKLKGAWHLVQMKSGKNWLLMKAKDEFSGDHVTFDENSILSQR
DFPEIEKEGVAWGEKKSNIQKPKTDSVAATNTAEFTADSLSGAVKLTRFPMDWRPQLATL
TDSVFDSEDWIFETKYDGYRALAQIQNNKADLISKNGNSFLSKYSTIAKALEQIHDDVIL
DGEIVVEDTKGTSHFQWLQHYEDTPEKGLLKFYIFDILYFNGYDLRGLELLQRKKILKAI
LPPLENCVYSTHVTTTGTALFQTIQKEGGEGIIAKKKSSTYHTDTRTKDWLKVKTTKEQE
MVIGGYTDPQGQRSGLGALLCGYYKDNAFVYSGKVGTGFSDNYLTALQKQLKKLEQPSCP
FSTPPKIQNVHWVSPKLVAQIKFSEWTESGNMRHPVFIALRSDKDPKTVVRETVQSKIKK
TPKTKMEKKAKPSEVQSDKVTFTNPDKVFWPDEKITKGAVISYYEQIAPYLLPFLKDRPQ
SLRRNPDGISKPGFFQKNVAGLVPDWIKTRKLKSKSTDETIEYLLCQDKDTLLFLANWGC
IELNPWSSRVGSINNPDYIIFDLDPNEADMEKLVATALKVKELLDRLKVTAYLKTSGGKG
LHIFIPVLPKYTYDQSRQFSHLISQMVHRELPDSTSLERSPDKRKGKIYLDFLQNGKGKT
MASVYSLRPRAGAPVSTPLEWEELHPKMDLKSYNIHTIIDRIATKGDLWKDFFEHKMDLK
TILASL
NT seq
2541 nt
+upstream
nt +downstream
nt
atgaaattagaacgatacaatcaaaagcgtgattttacaaaaacgaaagagcctaaaggt
gttccgaagaaatccaaaaacaccttacagtttgtcgttcagaaacatgccgcctcccat
cttcattatgacttcaggctggaaattgatggggtactcgtcagttgggcagtacctaaa
ggcccttctgcggatcctgccgacaaaaggctggctgtaatgacggaagaccatcctatg
gcatacctccattttgaaggaagtatacctgccggagaatatggtggtggaactgtaatg
gtttgggatacgggcgaataccgccccgaaggttccgaaaagccagcagatgacgccaga
atgatgatggaacaactcaaatcaggatcaataaaagtggtattggaaggcgggaaactc
aaaggtgcctggcatttggtacaaatgaaatccgggaaaaactggcttttgatgaaagct
aaagatgagttctcgggtgatcacgttacatttgatgaaaattccatcctcagtcaaagg
gattttcctgaaattgaaaaagaaggtgttgcctggggtgaaaaaaaaagtaacatccag
aaaccaaaaactgattcagttgcagctacaaatacagctgaattcacagccgacagcctt
tcgggagctgtaaaacttacccgctttccgatggactggcgaccacaattagcaacactc
accgatagtgtttttgatagtgaagactggatttttgaaacgaaatatgacggataccgt
gcgctggcacaaatccaaaacaataaagcagacctgatttccaaaaatggcaattctttt
ctttccaaatacagcactatagccaaagccttggagcaaattcacgatgatgtcatcctt
gatggcgagattgtagtagaagataccaaagggactagccatttccaatggttacagcat
tatgaagacactcctgaaaaagggctgttgaagttttacatctttgatatcctctatttt
aatggatatgacctgagagggctggaattactgcagcgtaaaaaaatactaaaagccatt
ttaccaccacttgaaaactgcgtgtattccacccatgtaaccactaccggaacggcactt
tttcaaaccattcaaaaagaaggcggtgaaggtattattgcaaaaaagaaaagcagtacc
taccatactgatacacgaaccaaagactggctaaaagtaaaaacaaccaaggaacaggaa
atggtaattggcggatataccgacccacaagggcaacgctccggtttgggggccctgctt
tgcggctattataaagacaatgcttttgtctattccggaaaagtaggtacgggattttca
gacaactacctgactgccttacaaaagcagttaaaaaaactggaacagccctcctgcccg
tttagtacaccgccaaaaatccaaaatgtacattgggtaagcccaaaacttgtagcccaa
atcaaattttcagaatggactgaaagtgggaatatgcggcatcctgtttttatcgccctg
cgctcagacaaagatcccaaaacagtagttcgggaaacagtacaatcgaagatcaaaaaa
accccaaaaacaaaaatggaaaagaaagcaaaaccatccgaagtgcaatccgataaagta
acctttacgaatccggataaagtattctggccggacgaaaaaataaccaaaggtgctgtg
atttcctattatgaacagatagcaccttacctcctaccctttttaaaagaccgtccgcag
tcattacggaggaatccggatggaattagtaagcccggctttttccagaagaatgttgcc
ggtttggtaccggattggatcaagacccgaaaactaaaatcaaaaagtacagatgaaacc
attgaatacctgctttgccaggataaagataccctgcttttcctggccaactggggttgt
atcgaattaaatccctggagcagtcgtgtcgggagcattaataatcccgattatattata
ttcgatttagatcctaatgaggctgatatggaaaaattagtcgctacagcattaaaggta
aaggaactattagaccggctaaaagtcacagcctatcttaaaacttcgggcggcaaaggc
ctgcatatctttattccggtattgcctaaatacacctatgaccaaagccgtcagttttcg
cacctgatcagtcaaatggtacatcgtgaattgccggatagtaccagcctggaacgaagc
cccgataaacgaaaaggtaaaatctatctcgatttcctccaaaatggtaaaggcaaaaca
atggccagtgtctattctctccggccccgtgcgggtgctcctgtgagtacaccattggaa
tgggaagaactacacccgaaaatggaccttaaaagttataacatccataccatcatcgat
cgtatcgcgacaaaaggggatttgtggaaagatttctttgagcataaaatggatttgaag
actattttagcctctttataa
DBGET
integrated database retrieval system
