Flavobacterium kingsejongi: FK004_15155
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Entry
FK004_15155 CDS
T05683
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fki
Flavobacterium kingsejongi
Pathway
fki03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FK004_15155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fki03400
]
FK004_15155
Enzymes [BR:
fki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FK004_15155
DNA repair and recombination proteins [BR:
fki03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FK004_15155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
DNA_ligase_OB_2
Kelch_KLHDC2_KLHL20_DRC7
Motif
Other DBs
NCBI-ProteinID:
AWG26464
UniProt:
A0A2S1LRW0
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All DBs
Position
3329782..3332322
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AA seq
846 aa
AA seq
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MKLERYNQKRDFTKTKEPKGVPKKSKNTLQFVVQKHAASHLHYDFRLEIDGVLVSWAVPK
GPSADPADKRLAVMTEDHPMAYLHFEGSIPAGEYGGGTVMVWDTGEYRPEGSEKPADDAR
MMMEQLKSGSIKVVLEGGKLKGAWHLVQMKSGKNWLLMKAKDEFSGDHVTFDENSILSQR
DFPEIEKEGVAWGEKKSNIQKPKTDSVAATNTAEFTADSLSGAVKLTRFPMDWRPQLATL
TDSVFDSEDWIFETKYDGYRALAQIQNNKADLISKNGNSFLSKYSTIAKALEQIHDDVIL
DGEIVVEDTKGTSHFQWLQHYEDTPEKGLLKFYIFDILYFNGYDLRGLELLQRKKILKAI
LPPLENCVYSTHVTTTGTALFQTIQKEGGEGIIAKKKSSTYHTDTRTKDWLKVKTTKEQE
MVIGGYTDPQGQRSGLGALLCGYYKDNAFVYSGKVGTGFSDNYLTALQKQLKKLEQPSCP
FSTPPKIQNVHWVSPKLVAQIKFSEWTESGNMRHPVFIALRSDKDPKTVVRETVQSKIKK
TPKTKMEKKAKPSEVQSDKVTFTNPDKVFWPDEKITKGAVISYYEQIAPYLLPFLKDRPQ
SLRRNPDGISKPGFFQKNVAGLVPDWIKTRKLKSKSTDETIEYLLCQDKDTLLFLANWGC
IELNPWSSRVGSINNPDYIIFDLDPNEADMEKLVATALKVKELLDRLKVTAYLKTSGGKG
LHIFIPVLPKYTYDQSRQFSHLISQMVHRELPDSTSLERSPDKRKGKIYLDFLQNGKGKT
MASVYSLRPRAGAPVSTPLEWEELHPKMDLKSYNIHTIIDRIATKGDLWKDFFEHKMDLK
TILASL
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagaacgatacaatcaaaagcgtgattttacaaaaacgaaagagcctaaaggt
gttccgaagaaatccaaaaacaccttacagtttgtcgttcagaaacatgccgcctcccat
cttcattatgacttcaggctggaaattgatggggtactcgtcagttgggcagtacctaaa
ggcccttctgcggatcctgccgacaaaaggctggctgtaatgacggaagaccatcctatg
gcatacctccattttgaaggaagtatacctgccggagaatatggtggtggaactgtaatg
gtttgggatacgggcgaataccgccccgaaggttccgaaaagccagcagatgacgccaga
atgatgatggaacaactcaaatcaggatcaataaaagtggtattggaaggcgggaaactc
aaaggtgcctggcatttggtacaaatgaaatccgggaaaaactggcttttgatgaaagct
aaagatgagttctcgggtgatcacgttacatttgatgaaaattccatcctcagtcaaagg
gattttcctgaaattgaaaaagaaggtgttgcctggggtgaaaaaaaaagtaacatccag
aaaccaaaaactgattcagttgcagctacaaatacagctgaattcacagccgacagcctt
tcgggagctgtaaaacttacccgctttccgatggactggcgaccacaattagcaacactc
accgatagtgtttttgatagtgaagactggatttttgaaacgaaatatgacggataccgt
gcgctggcacaaatccaaaacaataaagcagacctgatttccaaaaatggcaattctttt
ctttccaaatacagcactatagccaaagccttggagcaaattcacgatgatgtcatcctt
gatggcgagattgtagtagaagataccaaagggactagccatttccaatggttacagcat
tatgaagacactcctgaaaaagggctgttgaagttttacatctttgatatcctctatttt
aatggatatgacctgagagggctggaattactgcagcgtaaaaaaatactaaaagccatt
ttaccaccacttgaaaactgcgtgtattccacccatgtaaccactaccggaacggcactt
tttcaaaccattcaaaaagaaggcggtgaaggtattattgcaaaaaagaaaagcagtacc
taccatactgatacacgaaccaaagactggctaaaagtaaaaacaaccaaggaacaggaa
atggtaattggcggatataccgacccacaagggcaacgctccggtttgggggccctgctt
tgcggctattataaagacaatgcttttgtctattccggaaaagtaggtacgggattttca
gacaactacctgactgccttacaaaagcagttaaaaaaactggaacagccctcctgcccg
tttagtacaccgccaaaaatccaaaatgtacattgggtaagcccaaaacttgtagcccaa
atcaaattttcagaatggactgaaagtgggaatatgcggcatcctgtttttatcgccctg
cgctcagacaaagatcccaaaacagtagttcgggaaacagtacaatcgaagatcaaaaaa
accccaaaaacaaaaatggaaaagaaagcaaaaccatccgaagtgcaatccgataaagta
acctttacgaatccggataaagtattctggccggacgaaaaaataaccaaaggtgctgtg
atttcctattatgaacagatagcaccttacctcctaccctttttaaaagaccgtccgcag
tcattacggaggaatccggatggaattagtaagcccggctttttccagaagaatgttgcc
ggtttggtaccggattggatcaagacccgaaaactaaaatcaaaaagtacagatgaaacc
attgaatacctgctttgccaggataaagataccctgcttttcctggccaactggggttgt
atcgaattaaatccctggagcagtcgtgtcgggagcattaataatcccgattatattata
ttcgatttagatcctaatgaggctgatatggaaaaattagtcgctacagcattaaaggta
aaggaactattagaccggctaaaagtcacagcctatcttaaaacttcgggcggcaaaggc
ctgcatatctttattccggtattgcctaaatacacctatgaccaaagccgtcagttttcg
cacctgatcagtcaaatggtacatcgtgaattgccggatagtaccagcctggaacgaagc
cccgataaacgaaaaggtaaaatctatctcgatttcctccaaaatggtaaaggcaaaaca
atggccagtgtctattctctccggccccgtgcgggtgctcctgtgagtacaccattggaa
tgggaagaactacacccgaaaatggaccttaaaagttataacatccataccatcatcgat
cgtatcgcgacaaaaggggatttgtggaaagatttctttgagcataaaatggatttgaag
actattttagcctctttataa
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