Bernardetia litoralis: Fleli_3589
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Entry
Fleli_3589 CDS
T02149
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fli
Bernardetia litoralis
Pathway
fli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fleli_3589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fli03019
]
Fleli_3589
Enzymes [BR:
fli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fleli_3589
Messenger RNA biogenesis [BR:
fli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fleli_3589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
Fe-ADH
ERCC3_RAD25_C
AAA_22
CoV_M
Motif
Other DBs
NCBI-ProteinID:
AFM05907
UniProt:
I4APM2
LinkDB
All DBs
Position
4284269..4285654
Genome browser
AA seq
461 aa
AA seq
DB search
MSEISNKNNTTKSFADLGLSDELLQAVKKVGYTSPSPIQEKVIPFVLDRKDVLASAQTGT
GKTAGFTLPMLQLLTQDVKQRSKIRRRSLRCLILTPTRELAAQVFENVKEYSEFLDIRSA
VIFGGVNQNPQIRTLKNGVDVLVATPGRLLDLEGQKALSLADVEILVLDEADRMLDMGFL
HDIKRVIKLVPTKRQNLLFSATFSKEIKALAGKILSNHVTVEATPENTTVEKINQTVYSV
NKTRKSDLIIKLIDEGNWEQVLVFTRTKHGANRLSEKMTKRGIQAAAIHGNKTQNARTKA
LQGFKDGSIRVLVATDIAARGLDIPLLPYVINYELPNVAEDYVHRIGRTGRAGAGGDAIS
LVSHDEVEFVENIEKLLKEKIEKKVVEGFEPTAPSKEDIEEAELAARQRSGRGGFNRNRS
RNRTSSENKGKSNSVNLGKTKSNTKGRKSNNPKFGGKGRRK
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaattagtaataaaaataatacgactaaatcatttgctgatttaggtctttca
gatgagcttcttcaagccgtaaaaaaagtaggttatacttcaccttctccaattcaagaa
aaagtaattccttttgtcttggatagaaaagatgttttggcttcggcacaaacaggaaca
ggaaaaacagcaggttttaccttgccaatgcttcaacttcttactcaagatgtaaaacag
cgttcgaagattagaaggcgttctttgcgttgtcttattcttactcctactcgtgaactt
gcagcgcaggtctttgaaaatgtaaaagagtatagtgaatttttagatattcgaagtgct
gttatttttggtggtgtcaatcaaaatcctcaaataagaacgctaaaaaatggtgtcgat
gttttggtggctactccagggcgtttgttggatttggaagggcaaaaagctctttcgctt
gccgatgtagagattttagtcttagatgaagctgacagaatgctagatatgggatttttg
cacgatataaaacgagtgattaaacttgttcctaccaaaaggcaaaaccttcttttttct
gctactttctctaaagaaataaaagcattagcaggaaaaatacttagcaatcatgtaaca
gtagaggcaactccagaaaatacaaccgtagaaaaaattaatcaaacggtttatagtgta
aacaaaacacgaaaatcagatttgattataaagctgattgatgagggaaactgggagcag
gttttggtttttactcgtacaaagcatggtgcaaatcgtttgagcgaaaaaatgacaaaa
agaggaattcaagctgctgccattcatggaaataaaacacaaaatgcacgtacaaaagcc
ttacagggttttaaagatggttctattcgtgttttagttgcgacagatattgcagcgagg
ggattagatattccacttttgccgtatgtaattaattacgaattaccaaatgtagctgaa
gattatgtacatagaattggtcgtacaggtcgtgcaggagcaggtggagatgctatttct
ttagtttctcacgatgaagtagaatttgtagagaatatcgaaaaacttctcaaagagaaa
attgaaaaaaaagtagtagaagggtttgagccaactgccccttccaaagaagacatcgaa
gaagccgaattggcagcacgtcaaagaagtggaagaggtggttttaatagaaatcgaagt
agaaatcgtacttcttctgaaaataaaggaaaatcaaattctgtaaatttaggtaaaaca
aaatcaaatactaaaggacgtaaaagtaataatccaaaatttggaggaaaaggaagaaga
aaataa
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