Filimonas lacunae: FLA_5783
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Entry
FLA_5783 CDS
T05172
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fln
Filimonas lacunae
Pathway
fln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FLA_5783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fln03019
]
FLA_5783
03400 DNA repair and recombination proteins [BR:
fln03400
]
FLA_5783
Enzymes [BR:
fln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FLA_5783
Messenger RNA biogenesis [BR:
fln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FLA_5783
DNA repair and recombination proteins [BR:
fln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FLA_5783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
BAV09730
UniProt:
A0A173MQK3
LinkDB
All DBs
Position
7054843..7057161
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AA seq
772 aa
AA seq
DB search
MATSTKKSSSGATPAKGKTTISPKKTTTPKARPVKEGEALEHSYDIHAAIQEHFGFSQFK
GRQIEAINSLLNGNDTFVIMPTGGGKSLCYQLPAMILEGCAIVVSPLIALMKNQVDLVRG
YSEKDNVAHFLNSSLNKAQVREVKDDLLAGKTKLLYVAPETLTKQENLEFFSDLKISFFA
VDEAHCISEWGHDFRPEYRRLREMMEIINPDIPMIALTATATPKVQSDILKNLGLREPAV
LVSSFNRTNLYYEIQPKIKKEQTVKSIVRFISQNKGKSGIIYTLNRKTTEELAEVLVANN
IKAVAYHAGLDAKLRADRQDQFLNEDVQVIVATIAFGMGIDKPDIRFVIHFNIPKSIENY
YQETGRAGRDGLEGKCILYYSHKDVAKLEHLMRDKPLSEREVGAQLINETVAYAESAVCR
RKILLHYFGEEWDTVNCGNCDNCLNAKEKVEAKEEAVKVLKAVTALDERFPAEYVINVLI
GKLTPQISMFRHEGLPAFGTGKDRDEHFWNSLIRQLLLENMIRKDIEEYGLLKMAPAGEK
FLKKPASFKIVLNNLFEDANEDDDEAEKGGGGAGATDDKLFEMLKELRQKEAKKKGLPPF
VIFLESSLQDMATMFPTTIQELEKCSGVSKGKAARYGKPFIDIIERYVEENNIEKPDDFV
MKSVANKSSNKIYIIQNVDKKIPLETIARNKDLRLDALLEEMETIVASGTKLNLDYAIDD
ILDDDEQDEIMDYFRNCETSSLQLALEELSDGNYNWEQVKIMRIKFLCEYGN
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaagtactaaaaaatcgtcttccggcgcaaccccggcgaagggtaagacaaca
atatcccctaaaaaaaccactaccccaaaggccaggccagtaaaagaaggcgaagccttg
gaacacagctacgacattcacgctgctattcaggaacattttggttttagccagttcaaa
ggccggcaaatagaagccatcaacagcttactcaacggcaatgatacttttgtaattatg
ccaaccggcggtggtaaaagtctttgctaccagttaccggccatgattttggaaggttgc
gccatcgttgttagcccattgattgctttgatgaaaaaccaggtagacctggtgcgtgga
tacagcgaaaaagacaacgtagcgcattttttaaactcctctttaaataaagcacaggtt
agggaagtaaaagacgatttacttgccggcaaaaccaagttattatatgtagcccctgaa
actttgaccaaacaggaaaacctggaatttttcagcgacttaaagatttctttttttgcg
gtagacgaagcacactgtatttcggaatggggtcacgatttccgtcctgaatacagacgc
ctgcgtgaaatgatggagattatcaacccggatattcccatgattgcactgacagcaacg
gctactcctaaagtgcagagtgatattttaaaaaacctgggcttacgcgaaccggctgtt
ttagtgtcttctttcaacagaaccaacctgtattacgagatacagcctaaaataaagaaa
gaacaaaccgtaaaaagcattgttcgtttcatttctcagaacaaaggcaaaagcggtatt
atttatacgctcaaccggaaaactacggaggagctggcggaggtgctggttgctaacaac
attaaagcggttgcctaccacgctggtttggatgccaaacttcgtgctgacagacaagac
cagtttttaaacgaagatgttcaggtaattgtagctaccatcgcttttgggatgggtatt
gacaaaccagatatccgcttcgtaatccatttcaacattcctaagtctatcgaaaactac
taccaggaaactggtcgtgctggtcgtgatggcttagaaggcaagtgtatcttatattat
tctcataaagatgtggctaaactggaacacctgatgcgcgataagccgttgagcgaacgc
gaagttggcgcccagttaattaatgaaacagtggcttatgcagaaagcgctgtttgtcgc
aggaagatattgttacactactttggggaagaatgggacacagtgaactgtggaaattgt
gataactgtttgaatgccaaagaaaaagtagaagctaaagaggaagcggtaaaagtattg
aaagcggtaaccgctttagacgagcgcttccctgctgaatatgtgatcaatgttttaatt
ggaaaactgactccgcaaatcagcatgttccgtcacgaaggcttgcctgctttcggtact
ggtaaggatagagacgaacatttctggaacagccttatcaggcaactgttgctggaaaac
atgattcgcaaagacattgaagaatatggtttgctgaaaatggctccggctggtgagaaa
ttcctgaaaaaaccggcttcttttaaaatagtgttgaacaacctgtttgaagatgccaat
gaagacgacgacgaagccgaaaaaggtggcggcggtgccggtgctacagatgacaagctg
tttgaaatgctgaaagagcttcgtcagaaagaagcaaaaaagaaaggtttacctccgttt
gtcatcttcctggaatcatccctgcaggacatggccactatgttcccgactactatacag
gaactggaaaaatgttctggtgtaagtaaaggaaaggccgcccgttacggtaaaccgttt
attgatattattgagcgctatgtagaagaaaacaacatagaaaagccagacgattttgta
atgaagtcggtagctaacaaaagcagtaacaaaatctacattatccaaaacgtagataaa
aagataccgctggaaactattgcccgtaacaaagacctgcgcttagatgctttattggaa
gaaatggaaaccattgtagccagtggcaccaaactgaacctggattacgccattgacgat
attctggacgatgatgagcaggacgagattatggattacttccgtaattgcgaaacctct
tctctgcaactggccctggaagaattatcagacggtaactataactgggagcaggttaaa
ataatgaggatcaagtttttatgtgaatacggaaactaa
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