Candidatus Fluviicola riflensis: CHH17_15450
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Entry
CHH17_15450 CDS
T05019
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03030
DNA replication
flu03430
Mismatch repair
flu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHH17_15450
03430 Mismatch repair
CHH17_15450
03440 Homologous recombination
CHH17_15450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flu03032
]
CHH17_15450
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_15450
Enzymes [BR:
flu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHH17_15450
DNA replication proteins [BR:
flu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CHH17_15450
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CHH17_15450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
HHH_3
ChrB_C
Motif
Other DBs
NCBI-ProteinID:
ASS50095
LinkDB
All DBs
Position
complement(3593070..3597452)
Genome browser
AA seq
1460 aa
AA seq
DB search
MFLIFDTETTGLPRDWNAPLTDLDNWPRAVQIAWQLHDSDGNLLENKDFLIRPDGYDIPF
DAERIHGISTALATQEGADLDEVLVQFKDALNRSQFVVGQNVGFDVNIMGAELLRRGVET
NLHELPVLDTCTETTAGLTKLPGGRGGRFKLPTLTELHEYLFQVPFGEAHNATADVEATT
RCFFELVRREVFTLEELKAEPDFFEKFKSLHPSQIQPIGLVHINLKEASAKLKEVVAPSA
GDIDREAARVRLKNAPFVHLHNHTQFTILQSTMDVKSLIKQAMQHKMPAVALTDTSNMMG
AFHFEKAISGINKQIKADRAEAEEKGELFDQQEIMPIIGCELYVCRDRKDKQNKDNGYLV
VFLAKNKNGYHNLVKLASLAYTEGMYYVPRIDKTIVEQYKEDLIVLTGGLSGEVPNLLLN
VGEKQAEEALLWWKNQFGSDLYVEVMRHGQEDEDRVNASLIKLAQKHEVSLVATNNTFYA
AEQDANTHDILLCVRDGVQVATPKGKGRNFRFGLENEQYYFKSSEEMKELFLDLPEAIES
VGEILAKIEPYPLAREVLLPAFDIPEEFVDPLDATDGGKRGENAYLRYLTYKGAEKRYPV
ITDEIRERLDFELETVARTGYPGYFLIVQDFCQAARDMGVSVGPGRGSAAGSAVAYCIQI
TNVDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVIDWVINKYGSNQVAQIITYGTM
AAKSSIRDAGRVLNLPLLDTNMLAKLIPDNFSLDAIFNWEEPKIAEKLNNAVDMANVQEL
RSISRGFDLRAEVLRQAQRIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSSMWCTQF
DNSVAEEAGLLKMDFLGLKTLTLIKDAVKNVKKRHNIDLDPDTFPIDDLPTYELFQRGET
VGIFQYESPGMQKYMRELKPSVFADLIAMNALYRPGPLEYIPDFVKRKNGEQEIKYDLDA
CEEFLAETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQRYILDKMKPQFVEQGG
QRGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAVLSNNLN
DISQVTFFMEECRRMGVAVLGPDVNESAYEFTVNTAGAIRFGLGGIKGLGSGPVECIIQE
RAENGPFSSIFEMTKRVNLRLVNKKAMESMAYAGCFDSFSNIHRAQYFYPDGNGRTFLEN
AVRFGASLQENENSSQVSMFGESSDIKMPEPQVPVCEEWPTLMKLNFEKEVVGIFISGHP
LDDFRLEIEAFCSGKVEMLTKLPEYYGRELLIAAIVTDIQHLTTKTGKPFGIMNIEDYAG
GTKLYLFGDNYLKFDRFMKKDLIIAIRGKVQEGPYKDKITGLKPIEFAISNIEQLENLLE
TRSTTLNITIPIKSLDQLLMGKLETLFMESEGKCSVKFTVVDVLDDIKVTMPSRKLKIEP
SVKMINAIKELQLEVELEGS
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgatttttgataccgaaacaacgggtttaccacgcgattggaatgctcctttg
accgatttagacaattggccgagagcagttcagattgcctggcaattgcacgattcggac
ggtaatcttctggaaaataaggattttttgatccggccggatggttatgatattccattt
gatgctgagcgaattcatggaatttcaaccgctttggcaacacaggaaggagctgatttg
gatgaggttttggtgcagttcaaagacgcgctgaaccgctcgcagtttgtggtcggtcaa
aacgttggattcgatgtcaacattatgggcgcagaacttctgcgtcgcggtgtggaaacc
aacctgcatgagttaccggtgctcgatacctgtaccgaaactacggcaggactgaccaaa
cttcccggtggacgcggtgggcgatttaaattaccgacacttaccgagttacacgaatat
ttattccaggttccgtttggtgaagcccacaatgcgactgccgacgttgaggcaaccacg
cgttgtttcttcgaattggttcgtcgtgaggtatttacgcttgaagaattaaaggcagaa
cctgatttctttgagaaattcaaatcgcttcacccaagccagatccaaccgatcggattg
gtgcatatcaatctcaaggaagccagcgcgaaactcaaagaagtggtcgcgccaagtgcc
ggagatattgacagagaagcagcgcgtgtacgactcaaaaacgcgcctttcgtgcactta
cacaaccatacccaattcacgatcctgcaatcgaccatggatgtgaaaagcctcatcaaa
caggcaatgcagcacaaaatgccggcggtagcgcttacggatacttccaatatgatgggc
gcttttcatttcgaaaaagccatctcaggaatcaataaacaaatcaaagccgacagagcg
gaagccgaagaaaaaggcgaactatttgatcagcaggaaataatgccgatcatcggttgt
gagctttatgtgtgccgcgatagaaaagacaaacaaaacaaagacaacggttacctggtt
gttttccttgcgaaaaataaaaacggttaccataacctcgtgaaactggcttcgctggcc
tataccgaaggaatgtactacgttccgcgtattgacaaaacaatcgtggaacaatacaaa
gaagatctgatcgtactgacaggcggtttgtcgggtgaagtgccgaatttattactcaat
gtaggtgaaaaacaagccgaggaagcactgttgtggtggaaaaatcaattcggttctgac
ttatatgttgaagtcatgcgccatggccaggaagacgaagatcgtgtaaacgcgtctctg
ataaaacttgctcagaaacacgaagtttcgctggttgcaaccaataacactttttatgcc
gccgaacaggatgctaatacacatgatattctcctgtgcgtgcgcgatggtgttcaggta
gctacgccgaaaggaaaaggccgtaatttccggtttggcctcgaaaacgaacaatactac
ttcaaatcgtcggaggaaatgaaggaattgttccttgatttacccgaagcaatcgaatcg
gtaggagaaattttagcgaaaatagaaccgtatccgctggctcgtgaagtattgcttcct
gcctttgatattccggaagaattcgttgatccgttggatgcgaccgatggcggaaaacgt
ggtgaaaatgcctatttgcgctatttgacctataaaggtgccgaaaaacgttatccggtc
atcaccgatgaaattcgtgaacgactggattttgaactggaaacggttgcacgtaccggt
tatcccggttacttcctgattgttcaggatttttgccaggcagcgcgcgatatgggtgtt
tccgttggtccgggccgtggttcggcagcaggttcagccgtcgcctattgtatccagatc
acgaatgtcgacccgattgcttatgatctgctctttgagcgtttcctgaatcctgaccgt
gtgtcgatgcccgatatcgatatcgatttcgacgatgaaggccgcggccgtgtgatcgac
tgggtaatcaataaatacggttccaaccaggtagcacagatcattacgtatggaacaatg
gcggcgaaatcatctattcgcgatgcgggacgtgttttgaatctgcctttgctggatacg
aacatgctggcgaagctcattccggataacttttcactcgacgccatttttaactgggaa
gaacctaaaatagccgaaaaactgaataatgccgttgacatggcgaacgtacaggaattg
cgttccatttcccgcggttttgatttacgtgccgaagttttacgtcaggcacaacgtatt
gaaggttcggtccggaatacaggaattcacgcctgtggtgtgatcattacgccggacgac
attaccaatttcgtaccggtggcgctggctaaagattcgtccatgtggtgtacccaattc
gacaactcggtagctgaagaggcagggttgctgaaaatggacttcctgggtttgaagaca
ttgacgcttatcaaagacgcggtgaaaaacgtcaaaaagcgccacaatatcgacctcgat
ccggatacgttcccgattgatgatttgccgacttacgagttattccagcgtggtgaaact
gtcggaatcttccaatacgagtcacccggaatgcaaaaatacatgcgtgagctcaagccg
tcggtttttgccgatctgatcgccatgaatgccttgtatcgtccgggtccgcttgaatac
attcccgatttcgtaaaacggaaaaacggcgaacaggaaatcaagtacgatttggatgcc
tgtgaagaattccttgccgaaacttacgggattaccgtttatcaggagcaggtaatgttg
ttgtcgcaaaaactggccggtttctcgaaaggtgatgccgatgttttgcgtaaagcaatg
ggtaaaaagcagcgttacatcctggataagatgaaaccgcagtttgtggaacaaggcgga
caacgtggccatgatccggtggttttggaaaaaatctggaaagactgggaagcatttgcg
tcctatgccttcaacaaatcgcactcgacgtgttatgcatggattgcttaccaaacggcc
tatttaaaagccaattatccggccgaatttatggctgcggtattgagtaataacctcaat
gatatttcacaggtaacgtttttcatggaagaatgccgacgtatgggtgttgccgtttta
ggtccggatgtgaacgaatctgcatacgagtttacggtaaataccgccggagcgatccgt
ttcggcttaggtggaatcaaaggtttgggtagcggccccgtggaatgtatcatccaggaa
cgtgctgaaaacgggcctttttcttcgattttcgaaatgacgaaaagagtcaacttgcgt
ttggtgaacaaaaaagccatggaaagtatggcttatgccggttgttttgactcgttcagc
aacattcaccgtgcgcagtatttttatccggatggaaacggacgaacattcctcgaaaat
gcggttcgttttggtgccagtttgcaggaaaacgagaattcatcacaggtttcgatgttc
ggtgaatcgtcggatatcaaaatgcccgaaccacaagtgccggtgtgtgaagaatggccg
acactgatgaaactcaacttcgaaaaagaagtggtcgggatttttatttcaggccatccg
ctcgacgatttccgcctggaaatagaggctttttgcagcggaaaagtggaaatgcttacc
aaacttcccgaatactacggccgtgaattgctgattgcagcaattgttactgatattcaa
catctgactaccaagaccggaaaaccattcgggatcatgaatattgaggattatgccggt
ggaaccaagttgtacctgttcggtgataactacctcaagtttgaccgtttcatgaaaaaa
gacctcatcattgccatccgtggcaaggtgcaggaaggtccgtacaaagacaaaatcacc
ggtttaaaacccattgaatttgccatcagcaacatcgagcaactcgaaaatctgcttgaa
acccgttcaacgacgctcaatatcacgatcccgatcaagtcattggaccaattgctaatg
ggtaaactcgaaacgctgttcatggaatcggaaggcaaatgttcggtgaaatttactgta
gtcgacgtattggacgatatcaaagtaacgatgccatcgcgcaaactgaagatagaacct
tcggtgaaaatgatcaacgcgattaaagagttgcagctggaggttgagttggagggaagc
tag
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integrated database retrieval system
