Formosa sp. Hel3_A1_48: FORMA_17590
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Entry
FORMA_17590 CDS
T04482
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
foh
Formosa sp. Hel3_A1_48
Pathway
foh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMA_17590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foh03019
]
FORMA_17590
03400 DNA repair and recombination proteins [BR:
foh03400
]
FORMA_17590
Enzymes [BR:
foh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FORMA_17590
Messenger RNA biogenesis [BR:
foh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FORMA_17590
DNA repair and recombination proteins [BR:
foh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FORMA_17590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
LAGLIDADG_3
Motif
Other DBs
NCBI-ProteinID:
AOR26908
UniProt:
A0A1D7XU97
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Position
complement(1860841..1862745)
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AA seq
634 aa
AA seq
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MSLPHQILKRYWKFSEFRPHQLEIIEAVLDQQDCIALLPTAGGKSICFQIPALIKKGICI
VISPLIALMQDQVKGLNAKGIKATALTNLDQLGDLERILDNCIYGDYKFLYLSPERLQNA
LVQERIKSMDVHLIAVDEAHCISQWGHDFRPAYRSIKDIRGLCPKATILALTATATKKVI
FDIDEQLALKQSKLFKGSFFRKNLSYKTMIFEDKNFKIKALLKTNKQSAIVYTSSRRATQ
QLAQMLNLNGISSGYYHGGLSNKEKEHQYNQWISDKTNVIVATNAFGMGIDKANVSLVVH
TDIPESLEHYFQEAGRAGRNQDKAEAVLLIGTNDIQNTKKWRIDQIVDVPYIKLIYKKLC
AYFQIPYGELSEEKHGFNFDAFCTLYGLAKRKTYNSLKVLERHGLIVFEEYFKKKATIFF
LVNHNTLQKSFEHNDKLRLIVTSILRTYEGVNSQETNIDIGKVAKTLHLNEDEIIENLNA
LDAKEIVRFKCGNSDAQITFIQPREDDRAINRISKVVSTQNKNKLKKIKAVIHYIENNSV
CKSQQLLTYFDEPESMPCGTCNVCRENKGRSHNNFEKDNVDLILEALKVKPMTSRELVSN
LSISSNEVIAILRHLLEVEQIQQSQINEFQIKCP
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaccacatcaaatattgaaacgttattggaaattctccgaattcaggccacat
caattagaaattattgaggctgttttggaccaacaggactgtatagccttgttaccgact
gcgggaggcaaatctatctgttttcaaattcctgcacttattaaaaaaggaatatgtatt
gtaatttcgcctcttatcgcacttatgcaagatcaagtaaaaggattaaatgccaagggc
ataaaagcgacagctttaaccaacctagatcagttaggtgatctagagcgtattctagac
aattgtatttatggagattataaatttttgtacctatcgcccgagaggcttcaaaatgcg
cttgttcaggaacgaatcaaatcaatggatgtgcatttgattgcagtagacgaagcccat
tgcatcagtcaatggggtcatgattttagacccgcgtatagatcaataaaagatattcgt
ggtttgtgtccaaaagcaactattctagctcttactgcgactgctacaaaaaaagtaatc
tttgatatagatgaacaactagcactcaaacaatcaaaactctttaagggttcatttttt
agaaaaaatttgagctacaaaacaatgatttttgaagataaaaactttaaaataaaagca
cttttgaagactaataaacaaagtgctattgtgtatacttctagtagacgggcaacacaa
caactggcacaaatgctcaacttaaatggcatttctagtggatattaccacggaggtctt
agcaacaaagaaaaagaacatcaatacaatcagtggatttctgataaaactaatgtgata
gtggcaacaaatgcctttggaatgggtatcgacaaagctaatgtatctttagtggttcat
actgacatacctgagagtttagagcattattttcaagaagcaggaagagcaggtcggaat
caggacaaagctgaggccgttcttttaatcggaacaaatgatattcagaacactaagaaa
tggcggatagaccaaattgttgatgttccttatataaagttaatatataaaaaactgtgt
gcatattttcagataccctatggagaactgagcgaagaaaaacacggatttaattttgat
gcgttttgtacattatatggattagctaaacgaaaaacatacaatagtttaaaagttttg
gaacgtcatggactgattgttttcgaagaatatttcaaaaagaaggctacaattttcttt
ttggtaaaccataatacactgcagaaatcgttcgaacacaatgataagttaaggcttata
gtcacaagtattctacgaacttacgaaggggttaactctcaagaaacaaacatcgatatc
ggaaaagttgcaaagacattgcatctcaatgaagatgagattatagaaaacctaaatgcc
ctagatgctaaagagattgtaaggttcaaatgcggaaacagtgatgcacagatcactttt
attcaaccccgcgaggacgacagggctataaaccgcatttcaaaagtggtgtcgacccaa
aacaagaataaacttaaaaaaattaaagccgtaattcactacattgaaaacaattcggta
tgtaaaagtcagcagctgttaacatattttgatgaacctgagtcaatgccatgtggaaca
tgcaatgtgtgcagagaaaataaaggccgttcgcacaataattttgaaaaagataatgta
gatttgattttagaagctcttaaagttaagcctatgacctctagagaattagtgtctaat
ttatcaatttcatcaaatgaagtaatagcgattttgaggcatttacttgaagtggaacaa
atccaacaatcgcaaataaatgaatttcaaataaaatgtccataa
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