Formosa sp. Hel1_33_131: FORMB_01230
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Entry
FORMB_01230 CDS
T04465
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FORMB_01230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
for03019
]
FORMB_01230
Enzymes [BR:
for01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FORMB_01230
Messenger RNA biogenesis [BR:
for03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FORMB_01230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Helicase_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AOR27185
UniProt:
A0A1D7XV40
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Position
126916..128268
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AA seq
450 aa
AA seq
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MLSFEDFKLTTPLSNALQDLGFIEPTPIQEAAFSVICAGKDVVGIAQTGTGKTLAYSLPL
VRNLTYSTQENPRVLILVPTRELVVQVVDSLTDLNVYTNNRVLGVYGGTNINTQKQQIAA
GIDILVATPGRLYDLALSRVLQLKSIQKLVIDEVDVMLDLGFRHQLINIFDLLPERRQNI
MFSATMTTDVDALITDFFINPERISVALSGTPLENIMQFRYDVPNYYTKVNLIRFLMEER
DVFYRVLIFVSNKRMADRLFESLEEVFNDDCCVIHSNKTQNYRLRSIEQFREGFNRILVA
TDVMARGLDIDDVSHVINFDTPEYPENYMHRIGRTGRAKRKGTSILLSKVDETDSKDAIE
ALMQMNIETLDIPEVVEISKELIEEERPQINEPYNPHKQRDEDAPGPAFHDKKEKNTKEN
LGGSYKFIIAKKYKKPQTRGDKNYNKRNKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgttatctttcgaagactttaaattaaccactcccttaagcaatgcgcttcaggattta
ggatttattgaacccactcccattcaggaggcggctttcagtgtcatctgtgcaggaaaa
gatgtggttggaattgctcaaacgggaacgggaaaaacattggcttactccttgcctttg
gtgagaaacctcacctattcgactcaagagaacccacgtgttttgattttagtacctaca
cgtgaacttgtagtccaggtggtagactccttaacggatctaaacgtttatacgaataac
cgtgttttgggcgtttatggcggcaccaatatcaacactcaaaaacaacaaatagcagcc
ggaattgacattcttgtggccactcctggacgcttgtatgacttggcattgagtcgggta
ctacaacttaaaagcatacaaaaactggtgattgatgaagtggatgtcatgctcgattta
gggtttagacaccaattgattaacatttttgacttgctaccagaacgccgtcagaatatt
atgttttcggcaacgatgaccacagatgtggatgctttgattaccgattttttcatcaat
ccggagcgtatttcagtcgcactttctgggacacctctagagaatatcatgcagtttcgt
tacgatgttcccaattattatacaaaggtaaatttgattcggttcttaatggaagaacgc
gatgtgttttaccgcgtcctcatttttgtttccaacaaacgtatggcggaccgtctgttt
gaatcccttgaagaagtctttaatgacgactgttgtgtgattcactccaacaaaacccag
aattaccgtttgcgaagtattgaacaatttagagagggtttcaatagaattttagtggct
acagatgtcatggcacgtggattggatattgacgatgtatcgcatgtgatcaattttgac
actcctgagtatcccgaaaattatatgcaccgtattggtcgaacaggacgtgcgaaacga
aaaggaacgagtattctactttcaaaagttgatgagaccgattctaaagatgcgattgaa
gctttaatgcaaatgaacattgaaacgttagacattcctgaagtggtcgaaatttcaaaa
gaactcattgaagaagagcgtccacaaattaatgagccttacaatcctcacaaacaaaga
gatgaagatgcgccagggccggctttccacgataaaaaagaaaaaaatacaaaggaaaat
ttaggaggttcttataaatttattattgctaagaaatacaaaaaaccacaaacaagaggc
gataaaaattataacaaacggaataagaaataa
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