Fervidobacterium pennivorans: Ferpe_0661
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Entry
Ferpe_0661 CDS
T01808
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpe
Fervidobacterium pennivorans
Pathway
fpe03410
Base excision repair
fpe03430
Mismatch repair
fpe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Ferpe_0661
03430 Mismatch repair
Ferpe_0661
03440 Homologous recombination
Ferpe_0661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpe03400
]
Ferpe_0661
DNA repair and recombination proteins [BR:
fpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Ferpe_0661
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ferpe_0661
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ferpe_0661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
AFG34789
UniProt:
H9UB96
LinkDB
All DBs
Position
complement(696313..699273)
Genome browser
AA seq
986 aa
AA seq
DB search
MRWEIREVDETLVDQLTRELGIDRLVAKLLVLRGIKTAEEAKNFLYPTRKILRSPFLMKD
MDKATDILLRARDNREKVVVHGDYDVDGITGTAVLYTFLSENGWDVDYFIPKRADDGYGI
QSQFVEDAYKNGARVLLTVDCGITAFEAVDKAKELGMKVVITDHHQPKETFPNADAIVNP
KRHDEEYPFKEFAGVGVAYKLVSALAERLNIHPAVVDELLDLVALGTVADMVELLDENRY
IVKEGLRRLNNTAKLGIVRLVQKLGISIISSRDIGYRIAPKLNAAGRLDSPDDAFKLIIT
KDEASATELAELLLGYNVTRQSIEAKIYNEAVQMVEEKGLSSLPIVVAYGHGWHLGVIGI
VATRLVHLYNKPVMVISIEEDGVARGSARSVQGVNIIELLERFRDIFEDFGGHTMALGFS
LREEKIPDLIEAIKTHITEDDVKVEPVVMIDEKITIDEINDGIIRAIELLEPYGHGNPEP
VFLIQNSAVERFKIFGETGYNVRVTLKGNNKSIEGVGFGLKIQPSELYGLQPQFLRMDVV
GNLRMGESGLQLNLIDLKVTHVNDEDLADRTFIHSFISNWRQQREEDYDHQRIEDDIYQR
LPRIAELVEIKRPALIRFDIPYRNAFFFHLMRKGRTLIVNPSSTEAMHVYESLQRHNIPG
LALANSIHRVAGKHLVTNAVYAEKFLDNLSDFDFIVLNEIHFMRNFDPELYEKVLRKFGK
TAFFTTLYTFETNLPTYEVNGKSDFSIEDKRNQPKSLNNSNSSLVYLFSTHNSVEVFFNN
YIKRVSSRDTVFYSSQLEPFQRLIISHLVRKRKVKKLISSTNNDSLPSLFGKVEVRLFDF
PYTLSEIIDTVSGEGNILLQLNYSTQDVSRKRDSLRKLFPSKEELEKIVEELNVYLPMKL
EEFEQFLSNYSVPKGVIKSVYRDLGGIRENLVCAVDFEPEKITRLKERNIELGYFERYTL
QIESLNVKEMFKLIDERYLYDAELIV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgagatgggaaataagagaagttgatgaaacacttgtcgaccagcttaccagggagctg
ggaattgaccgtttggtggcaaaactgttagtgcttcgtggtataaaaactgccgaagaa
gctaagaatttcttgtatccaacaagaaaaattttacgttcaccatttctaatgaaagac
atggacaaagctactgatattttgctaagagcaagggataaccgtgagaaagttgttgtt
cacggagattatgatgttgacggtataactggaactgccgtattatacaccttcctttcg
gaaaatggttgggatgtagattatttcattcctaagcgtgcggatgacggttatggaatc
cagtcgcagtttgtagaagatgcttataaaaatggtgcaagggttctcttaaccgtagac
tgtggaattacagcatttgaagctgttgataaagccaaagaattgggaatgaaagttgtg
attactgaccaccaccaacccaaagaaaccttcccaaatgcggatgctattgttaacccc
aaacgtcatgacgaggaatatccatttaaagagttcgcaggcgttggagtcgcttataaa
ctggtatctgcattggctgaaaggcttaacattcatccggcagttgttgatgaattgctt
gacctcgtggcgttgggaactgttgcagacatggtcgagttacttgacgagaaccgttac
atagttaaagaaggacttagaagattaaataataccgcaaagcttggtattgttcgtttg
gtgcaaaaacttgggatatcaatcataagctctcgtgacatcggctatagaatagctcca
aaactcaacgctgctggtagactcgattcgccagatgatgcgttcaagctaatcataaca
aaggacgaagcaagtgctaccgaactggctgaattgttgttgggttacaacgtaacaagg
caaagtattgaggcaaagatatacaatgaagcagttcaaatggttgaagaaaaaggcctc
agttcacttccaatagttgttgcatacggtcacgggtggcacttgggtgttatcggaata
gttgctacaaggcttgttcatttgtacaataaacctgttatggttatttctattgaagaa
gatggtgttgcaagaggttctgcaaggagtgttcagggagtaaacattatagagcttctc
gaaaggttcagggatatttttgaagactttggtggtcatacaatggcattaggatttagt
cttagagaggaaaaaataccagacttaatagaggcaattaaaacgcatataacggaagac
gatgtaaaagttgagcctgtcgttatgatagatgagaagataacaatcgatgagattaat
gatggtataataagggccattgagttgctcgaaccatatggccacggtaacccggaacca
gtgtttctaattcaaaacagtgctgttgaaagattcaaaatctttggggaaactgggtac
aatgttcgagtaacgttaaaaggtaataataaaagcatagaaggagtcggttttggattg
aaaattcaaccatctgaattatatggactgcaaccacaatttcttagaatggatgtcgtt
ggcaatctaagaatgggagaaagtggtttgcaactgaacttaatagacttaaaagtgaca
catgttaacgatgaagatttagctgacaggacatttatacattcgttcatatcgaactgg
cgacagcaaagagaagaagattatgaccatcaacggatagaagatgacatataccaaaga
ctgccgcgcattgctgaacttgttgaaattaaaaggcctgcattgatacgtttcgatata
ccgtatagaaatgcctttttcttccatttgatgagaaagggaagaaccctcatagtgaat
ccttcaagcacggaagcaatgcatgtctacgaaagtttgcaaagacacaacatcccggga
ttagcacttgcaaattctatccatcgtgtcgcagggaaacatttggtaactaatgccgtt
tacgcagaaaaatttctagacaacctttctgatttcgatttcattgtgcttaacgaaatt
cattttatgaggaactttgacccggaactttatgaaaaggttttaagaaagtttggaaaa
actgcgtttttcacaacactgtatacatttgaaaccaatctcccgacttatgaagttaac
ggaaagagtgatttttcaattgaagataaaagaaatcaaccaaaatctttgaacaattct
aattcctccttggtttatctgttttccacacacaattcagtagaagtgttcttcaataat
tacataaagcgtgtatcaagcagagatactgttttctactcgtctcaacttgagccattc
cagagactgataatttcgcatttggtgaggaaaagaaaggtaaaaaaacttatttcttct
accaataatgattcgttgccttcgctttttggaaaggtcgaagtaaggctttttgacttt
ccatatactttgagtgagataatagacactgtaagcggcgagggaaacatactcttgcaa
ctgaactactcgactcaagatgtttctaggaaacgtgattcgctcagaaaacttttccca
tcgaaagaagaattggagaaaattgtggaagaactcaacgtatacctaccaatgaaatta
gaggaattcgaacaattcctttctaactatagtgtgccaaagggtgttatcaagagcgtt
tacagagaccttggcggtatcagggaaaaccttgtttgtgctgttgactttgagcctgaa
aaaataacaagacttaaggaacggaacatcgagttaggatactttgaacgctacaccttg
caaatagagtcactcaacgtcaaggaaatgtttaagcttatcgatgaaaggtatctttac
gatgcagaactgattgtctaa
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