Flavobacterium pectinovorum: Q1W71_02350
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Entry
Q1W71_02350 CDS
T09245
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fpec
Flavobacterium pectinovorum
Pathway
fpec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q1W71_02350 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpec03400
]
Q1W71_02350 (ligD)
Enzymes [BR:
fpec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q1W71_02350 (ligD)
DNA repair and recombination proteins [BR:
fpec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q1W71_02350 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WKL48629
LinkDB
All DBs
Position
complement(526728..529325)
Genome browser
AA seq
865 aa
AA seq
DB search
MSLSKYNQKRNFKQTEEPEGKIGKSEKDLIFVVQKHAASHLHYDFRLELDGVLKSWAVPK
GPSMDPEIKRLAMMVEDHPYDYKDFEGSIPEGNYGAGNVIVWDNGTYTTADEDAVSARKA
LKAALHKGHLSFVLKGKKLKGEFSLVKLHGKQENAWLLIKKKDKYATEEDILKKNKSVLS
NQTLESLEKKTESASKKNKIEDEDTAEETTPRKTKTAKTKTDKKEDIGFVSPMLANIFDK
PFDDPDWVFENKYDGYRTLATITPDEVHLFSRNELPFDKNFKPVLKELEKIKHEVILDGE
VVVENDAGKASFQHLQNYLKTGEGNLKYFVFDILNLDGFSTVDLTLLERKELLKMLLEKY
SFSNVFYSEHTIENGLKSLEIATNNNSEGIMAKKANGTYLIGKRSNNWLKIKIAQQEEAV
IIGITEPKNSRSYFGALLLGQYYGKRLEYIGKCGTGFTEEVLKDLYTKFKPLFIKESPVV
QKIKLRDKIQWLKPKFVCQVKFTEWTDDMRLRHPVYLGLRVDKKASEVFLTSKTKTLNTE
VMKTKEKPETAKKQLETGKEKDYDLKVGTKTLHLTNQNKIYFPESGITKGEIVQYYNEVA
DFILPYLKDRPQSMNRFPNGIDAPSFYQKDVDVDKIPSWLKTKKVYSESNDEHLDYLICN
DKATLLYMANLGCIDINPWNSTIKHIENPDWLVIDIDPSKDKFEEVVQTALTVKEVMDEF
ETECYCKTSGASGLHVYIPLGAKYDYDSIKIFAQLVATEIQKRIPEITSLERSIKKRNNK
IYVDYLQNRRGQTLAAPYSVRPVPGAQVSMPLEWSEVTPKLHPSQFTIKNVLSRFEKKGD
LWAPVLGKGANIQKIIKNYGLGVKS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgtcactttccaaatacaaccaaaaacgtaatttcaagcaaaccgaggagcctgaaggc
aaaattggcaaatctgaaaaagacctcatttttgtggttcaaaaacatgcagcttcgcat
ttgcattacgattttaggctggaactggatggtgttcttaaaagttgggccgttcccaaa
ggtccgtctatggatcccgaaataaaacgacttgccatgatggtcgaggatcatccatat
gattataaggattttgaaggctcaattccagaaggaaattacggtgccggaaatgttatt
gtttgggataacggaacttatacgactgcagatgaagatgctgtttcggccagaaaagca
ttaaaagccgcattgcataaaggccatttgagttttgttttaaaaggaaaaaaacttaaa
ggcgaattttctttggtaaaactccatggtaaacaggaaaatgcctggcttttgattaaa
aaaaaggacaaatatgccacggaagaagatattttgaagaaaaacaaatcagttctctcg
aatcagactttagaatcgctagagaaaaaaacggaaagtgcttcaaaaaaaaataaaatt
gaagatgaagataccgccgaagaaactactcccaggaaaaccaaaacagcaaaaaccaaa
acagacaaaaaagaagatataggctttgtttcgccaatgctggcaaatatttttgacaaa
ccttttgatgatcctgactgggtttttgaaaataaatatgacggttacagaactctcgcc
accattacgccagatgaagtgcatttgtttagccgaaacgaacttccatttgataaaaac
ttcaaacctgttttaaaagaacttgaaaaaataaaacatgaagttattctggatggtgaa
gttgttgttgaaaatgatgcgggaaaagccagttttcagcaccttcaaaattatcttaaa
accggagaaggaaatttaaaatattttgtttttgatattttaaatctggatggtttttct
actgtcgatttaactttacttgaacgaaaagagcttttaaaaatgctattggaaaaatat
tctttttcgaatgttttttactctgaacatactatcgaaaacggacttaaaagcttagaa
attgccacaaataacaatagtgaaggtataatggccaagaaagctaatggcacttatttg
attggaaaaagaagcaataactggcttaaaataaaaattgcacagcaggaagaagctgtt
attataggaattaccgaacccaaaaattcccgcagttactttggtgccttgcttttagga
caatattacggtaaaagactggaatatattggtaaatgcggaaccggatttacagaggaa
gtactgaaggatttatacacgaaatttaaaccattgtttataaaagaatctccggttgta
caaaaaataaaacttcgggataagatacaatggttaaaaccaaaatttgtctgccaggtt
aaatttacagaatggacggatgatatgcgactaagacatcccgtttatctgggcttgaga
gtggataaaaaagcaagtgaagtttttttgacttcaaaaaccaaaactttaaacacggaa
gttatgaagactaaagaaaaaccagaaacggccaaaaaacaactggaaacgggtaaagaa
aaagattatgatttgaaagtgggtacaaaaacgcttcaccttaccaatcaaaacaaaata
tattttcctgaaagcggaattactaaaggcgaaattgtgcaatattataatgaagttgct
gattttattttgccgtatttaaaagatcgtccacaatctatgaatcgatttcctaacgga
attgatgcgccaagtttttatcagaaagatgttgatgtagataaaattccgtcgtggcta
aaaaccaaaaaagtatattcagaatcaaatgatgaacatctggattatttaatttgcaat
gacaaagcgactttgctttatatggcaaatttgggttgtattgacataaatccatggaat
tcaaccatcaaacatattgaaaatccggattggcttgtaatcgatattgatccttcaaaa
gataaatttgaagaagttgtgcaaactgccttaaccgtaaaagaagttatggatgaattt
gaaaccgaatgttattgcaaaacttcgggggcttcgggcttgcatgtatatattccgctt
ggcgcgaaatacgattatgattcaattaaaattttcgcacaattagtggcaacagaaatt
caaaaacgaattcccgaaattacttctctggaacgaagcatcaaaaaaagaaataataaa
atttatgtagattacctgcaaaatcgccgcggacaaactttggctgcaccctactctgtt
cgccctgtgcccggagcgcaggtttcaatgcctttagaatggagcgaagtaactccaaaa
ttgcatccgtcgcaatttaccatcaaaaatgtcttgtccagatttgagaaaaaaggtgat
ttatgggcgcctgttttaggcaaaggagcgaatatccagaaaattatcaagaattatgga
ttgggagttaaaagttag
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