Francisella philomiragia O#319-067: KU46_271
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Entry
KU46_271 CDS
T03619
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fpx
Francisella philomiragia O#319-067
Pathway
fpx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KU46_271 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpx03021
]
KU46_271 (rpoC)
03400 DNA repair and recombination proteins [BR:
fpx03400
]
KU46_271 (rpoC)
Enzymes [BR:
fpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KU46_271 (rpoC)
Transcription machinery [BR:
fpx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KU46_271 (rpoC)
DNA repair and recombination proteins [BR:
fpx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KU46_271 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AJI49090
LinkDB
All DBs
Position
complement(285864..290114)
Genome browser
AA seq
1416 aa
AA seq
DB search
MNNGILHQNYNSKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIF
GPIKDYECLCGKYKRLKHRGVVCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPS
RIGLFLDMPLKNVEKVLYFESYIVTDPGMTPLEKKQLLTDDEYAEALENYGYEFEASMGA
EAIRDLLADTDLETEIESLQAEYEESKSTAKKEKAIKRLRLLETFQASGNKPEWMVMTVL
PVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVRNEKRMLQEA
VDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLR
LHECGLPKKMALELFKPFVYSKLRLGGYATTIKQAKRMVELEEAVVWDILEVVINEHPVL
LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARV
LMMSTNNILSPASGQPIITPTQDIVLGLYYITREKEGARGEGKLFSNYDDVSRAYNSGTI
DIHAKIKLRIDRQVFDTKGNTYNEKGVVNTTVGRALLLNILPEGLSFSLLNKVLVKKEIS
KIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDDMTIPENKEAKVEEAEKEIK
HITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVMVNGENKEIESFNSVY
MMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGL
ADTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRT
LAADVVTEKGVVLLEAGTLLDENLVEILDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLA
RERKVNVGESVGVIAAQSIGEPGTQLTMRTFHTGGAASLGITVSDIKVKTAGKIKFKNIR
TVTNKDGQNIVISRAGEIIVSDTMGRVREQHKIPMGAVVPLASGKGVEIGDVIATWDPHA
QPLITDVAGKVVLEDVIDGITSKHTYDDLTGQQTIEITSISQRTTSKNLKPVVKVVDEKG
NEIKSISLAVGAVLNVTDDSVLEVGDVVAKIPLEGSKNKDITGGLPRVAELFEARRPKDA
AILSPCDGMVRLGNRDTKEKQRIEILDKSGHIAEEILLPKSRHLVVFDGEQVSKGDVLAD
GPTDPHDLLKYKGLEAFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKATILDEGDS
KFVKDESIELVRILEENDRLAKEGKRLVEYELTLMGITRSSLSTESFLSAASFQETTRVL
TEASIHSQVDQLRGLKENVLIGRLIPTGTGLAVRKESNKIEKMREELGVEDNMIFTEASS
FNTEDTLFENQIEKEDKDINDDIEESLRNALESLDF
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacggtatcctacatcaaaactacaatagtaaaaagtttgatattattaaaata
tctttagcatctccagaggtcattcgttcatggtctcatggtgaagttaaaaaaccagaa
actataaattatagaacattcaaaccagagagagatggattattctgtgctaaaatcttt
ggtccaataaaagactacgaatgtttgtgtggtaagtataaaagacttaagcatcgtggc
gtagtatgtgagcgttgtggtgttgaggtagagcaggccaaagtacgtagagaaagaatg
ggtcatatagatttagtgtgtccagtagtacatatatggtatctaaaatctttgccttct
agaataggtctgtttcttgatatgccattaaaaaatgttgagaaggttctatactttgaa
tcttacatagttacagatccaggcatgactccactagagaaaaaacagcttcttactgat
gatgagtatgctgaagctcttgagaactatggttatgagtttgaagcatctatgggtgca
gaagctataagagacttattagcagatactgatcttgaaactgaaatagagtctttacaa
gccgaatatgaagagagtaaatctacagctaaaaaagaaaaagctattaagagattaaga
cttcttgaaactttccaagcatctggaaataaacctgagtggatggtaatgactgtgtta
ccagttttaccgccagatttaagaccattagttccaattgaaggtggtagatttgcaact
tctgatcttaatgatttgtatcgtagagtaattaatagaaacaatagacttaaaaaacta
ttggatctaaatgctccagatattattgttagaaatgaaaagagaatgttgcaagaagct
gtagatgcgttactagataacggtagacgtggtagggctgtaacaggttcaaataaacgc
ccacttaagtctcttgctgatatgataaaaggtaagcaaggacgtttccgtcagaactta
cttggtaaacgtgtagactattctggccgttctgtaattacggttggtccatctctaaga
ttgcatgagtgtggtttacctaaaaagatggcattagagctatttaagccttttgtatac
tctaagttaagattaggtggttatgcaacaactatcaaacaagctaagagaatggttgag
cttgaagaggctgttgtatgggatattttagaagttgttattaatgagcatcctgtatta
ctaaaccgtgctccaacacttcatagacttggtattcaggcattcgaacctaagctaatc
gaaggtaaagcgatacagctacatcctttggtttgtgcggcatttaacgccgatttcgat
ggtgaccaaatggctgtacacgtaccattaactgtagagtctcaattagaagccagagta
ttaatgatgtctacaaacaacatcttatctccagcatctggtcagccgattatcactcct
actcaagatattgtactaggtttgtactacattactagagagaaagagggcgctcgtggt
gaaggtaaattattctcaaactatgatgatgtcagtagagcatataactctggcactata
gatattcatgctaaaattaagcttagaatagatagacaagtttttgatactaaaggcaat
acttataatgagaagggagttgttaatactactgttggtagagcattacttcttaatata
ttacctgaaggtttgtcattctcattattaaataaagtacttgttaagaaagaaatttct
aagattattaatcaagcatttagagtgctaggtggtaaggcaactgtagttttagctgat
aaattaatgtatgcaggttttaagtattcgacattatcaggtgtttctgtaggtgttgat
gatatgacaatacctgaaaataaagaggctaaagtagaagaagcagaaaaagaaattaag
catattacggagcagtatcaatcttcactaattacagagaatgaaagatataataatatc
atcaatatttggagcaaaacttcggatgaggttggtgcttcgatgatggatgcgatttca
aaagatactgtaatggtaaatggtgagaataaagaaatcgaatcatttaactctgtatat
atgatggcaaaatcaggtgctaggggttcttataaccagatgagacagcttgcaggtatg
cgtggtctaatggctaagccagatggaacgatgattgaaactgctattactgcaaacttt
agagaaggcttgtcagtattgcagtactttacatctactcacggagctcgtaaaggtcta
gcagatacagcattgaagacagctaacgctggttacctaactcgtagacttgtggatgtt
gcccaagatttagttgttatcgaagaagattgtggtactgatgatggtttaatgttctca
gctattgttgaagatggcgaagttaaagttcctctagtagagagagctttaggtagaaca
ttagctgctgatgttgtgactgaaaagggagttgttctattagaagctggtactctactt
gatgaaaatcttgttgagatacttgacgataatggtattgacatgattaaggttagatct
ccaattacatgtaaaactcgtagaggcttatgtgctaaatgttatggtcgtgaccttgct
cgtgaaagaaaagtcaatgtcggtgagtctgttggtgtaattgctgctcagtcaattggt
gagccaggtacacagcttacgatgagaacattccatactggtggtgcggcatcattaggt
attacagtatctgatattaaagttaagactgctggtaagattaagttcaaaaacatcaga
acagttacaaataaagatggtcaaaatatagttatatcaagagctggtgaaattatagtt
tctgatactatgggccgtgttagagagcaacataaaatccctatgggtgcggttgttcct
ttagcaagtggtaagggtgttgagattggcgatgttatagcaacttgggatccgcatgct
cagccgttaattacagatgttgctggtaaagttgttttagaagacgttattgatggtatt
acatcaaagcatacatatgatgatttaactggtcagcaaactattgagataacttcaata
tctcaaagaacaacctctaagaacttaaagccagttgttaaagttgttgatgaaaaaggc
aatgagattaaatcaatttcattagctgtaggtgctgtattgaacgttactgatgattca
gtattagaggttggtgatgttgttgctaagattcctttagaaggatctaagaataaggat
attacaggtggtcttccaagagttgctgaactttttgaggctagacgccctaaagatgct
gcaatattatcaccttgtgatggtatggttagattgggtaatagagatactaaagaaaag
caaaggattgaaatcttggataagagtggtcatattgctgaagagatactattgcctaaa
tctagacatctagtagtttttgatggcgaacaggtatctaaaggcgacgtgttagccgat
ggtcctactgatccacatgatcttcttaagtataaaggcttagaagcgtttgctgactat
atcttgattgaagctcagtctgtatatcgtatgcaaggtgttgtaattaacgataagcat
attgaaacaatcgttagacagatgttaagaaaagcaacaattcttgatgaaggtgatagt
aagtttgtcaaagatgaaagtattgaattagtaagaatactcgaagaaaatgatagacta
gctaaagaaggtaagagattggttgagtatgagcttactctaatgggtatcactagatca
tctttatctacggagtcattcttgtctgcagcatcgttccaagaaacgactagagtatta
actgaggcttcgatacattctcaagttgatcaattaagaggacttaaagaaaacgttctt
attggtagattaatacctacaggtacaggtttagcggttagaaaagagtctaataaaatt
gagaagatgagagaagagctaggtgtagaagataatatgatattcacagaagcatcatca
tttaacactgaagatactctctttgagaatcagattgaaaaagaagataaagatattaat
gatgatattgaagagtcattaagaaatgctttggaatctttagatttctaa
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