Fibrobacter succinogenes: FSU_0943
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Entry
FSU_0943 CDS
T02105
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fsc
Fibrobacter succinogenes
Brite
KEGG Orthology (KO) [BR:
fsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsc03019
]
FSU_0943 (hrpA)
Enzymes [BR:
fsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FSU_0943 (hrpA)
Messenger RNA biogenesis [BR:
fsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FSU_0943 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
nSTAND3
Hit1_C
Motif
Other DBs
NCBI-ProteinID:
ADL24593
UniProt:
C9RLX0
LinkDB
All DBs
Position
complement(1048377..1052423)
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AA seq
1348 aa
AA seq
DB search
MQLTDLKIEYPELPVVEHREEFFDLLEKHQVIIVKADTGSGKSTQLPKFLLEWFIAKTRD
EGRETREAAAHTSKGEARAHTSEHEVRLFKIGVTEPRRLAAISIADRLREELKDEELVST
KIRFWEQGTNEAPIKVMTDGILLQEFRKDRLFRQYNAIMIDEAHERSLNIDILLGIFKTV
LSRRPDFKLIVASATLDAKLFEEFYDNSCVMEAEGRTYPVDVEYYFSDYGSASALRDISG
KGDSGLIEEARDAILDLETRHRDHLLCFLPTERDIQDLMGELAHELDAATFDVLPLYGRM
SPDEQRRIFKHTGKTRVVLATNIAETSLTIPGIAYVVDTGMARISRYNAQARIQGLPVEE
ISKASARQRTGRAGRVKPGVCIRLYSPENFEKRDEFTEPEIRRSNLANVVLQLRSLGLEL
ENFPFLQSPPHSAFRGAYKTLFELGALTADNSSGYVTKLGRDMTRLPMDVSLSAVLLRAR
DLGVLQPALIVCSALSIQDPRVVPNDEPERTRIRQLHRKFCGHKSDFLVYVSMWNAFCTD
WDGKSWNKLRKFCDKNSMHFLRLREWVDLYEQFSRILEVKFENKVCPFDSFHRDNLHIAL
LSGFLGGIAHRDIENGCYRLVSGRETHVFPGSDLYAKSVEWLFSAEVRETSRTFLTKAAE
IKPEWILQVAEPFCTRRWFEPTWNKERGFVEAVEEVSFRGLVISRGHRVDYARVNPEDCA
QIFWREAVVMGEVARPFDFMKHNDHVVENLHALEARKRQFGLAPSEDALVEYYTRIAGNV
NSIKTLKSYIYEHTDQFLKFDEKYWLDLLDERTLAGSLQTKDERGFGTKLSDFLPKQSQT
SKARSADPIAPTLGGSIEHFRIGERVVTGEMVFDATRDCDGITLSLPYDLLTEISPAKFA
MSIQQWREWMIESVIREMPKSVKKLLEAKRTAIDDEFFAALDNFPHKAPLLLLYEVLSNT
KEIRSGANGASIDVPTVNPDKENHLRLHLVVSKPGFPEPYKLEISPEWGSYRMFLAVRPA
LVTFGIDFPLEGMRFGWRLGQSALMVSDESRFWQAFRKRVEGARLEKALHLETAAHPAPQ
KTSFSEEKKQLIADRLNLLEMGGVFADNFETALKIWVAKSLAADSLDATRCVRFTGLEFS
RGKKIRDFKSLAANTRSEDEEIRLSLVRATYESGLIGAEAFVKNWNLLKDFSVEMRSGNG
KSTVKNKTIIAIHTAYQKELILFERLRVLAELFNIEFPFGASHNSSASRDSSASLENTEL
SANTLREYFRPYLKARYLKDHELKNARELLGKIDRTPTDDPEFAELYLQAKALLEDFEIL
KYKRKGNDAEDIVEEDALARLKGRFGRL
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaccgacttgaaaattgagtacccggagcttcccgttgttgaacatcgggag
gagttttttgaccttttagaaaaacatcaagttatcatcgtcaaggccgataccggttcc
ggcaaatccacgcaattaccgaagtttttgttagaatggtttattgcgaagacgagagac
gagggacgagagacgagagaggctgccgctcatacctcaaagggcgaagcccgtgctcat
acctcagagcacgaagtgcgactttttaaaattggtgtgacggaacctcggcgtttggcg
gcgatttccattgcggaccgcttgcgtgaagaactcaaggacgaagagcttgtttcaacg
aaaattcgtttctgggaacaaggtacaaatgaagcccccatcaaggtgatgacggatggt
atcttgttgcaggagttccgcaaggaccgcttgttccggcagtacaatgctatcatgatt
gacgaagcgcatgaacgctcgttgaacatcgatatcttgcttggcattttcaagacggta
ctttctcgtcgtccagatttcaagttaatcgttgcatcagcaacgcttgacgcaaaactt
tttgaagaattttatgacaacagttgcgtgatggaggccgaaggccgcacgtaccctgtg
gatgtcgagtattatttctcggactatggttcggcaagcgcactccgtgacatctcgggc
aagggcgattctggcttaatcgaagaagcgcgtgatgcgattctcgatttggaaacgcgc
catcgtgaccatttgctttgctttttgccgacggaacgcgacattcaggacttgatgggt
gagcttgcgcacgagctggatgcagcgacttttgatgtgctcccgctttacgggcgtatg
agccctgacgagcaacgtcgcattttcaagcacacgggcaagactcgcgtggtcttggca
acgaacattgctgaaacgtctctcacgattccgggaattgcttacgttgtcgatacgggt
atggctcgaatctcgcgctacaatgcgcaggcgagaatccaggggcttcccgtcgaagaa
atttcgaaggccagcgcgcggcagcgcactggacgcgcggggcgcgtgaagcccggcgtg
tgcattcgcctttactctcccgagaattttgaaaagcgcgatgaattcacggagccagaa
attcgccgtagcaatttggcaaatgtcgttttgcagttgcgcagtctcgggctggaactc
gaaaacttcccgttcttacagtcgcctccgcattcggcattccgtggcgcttacaagacg
ttgtttgaacttggcgcactcacggcagacaattctagcggttatgtgaccaagcttggc
cgcgatatgacgcgcctcccgatggacgtgtcgctttcggcggtgcttttgcgtgctcgt
gatttgggcgttttgcagccggcgcttatcgtgtgctcggcgcttagcattcaggacccg
cgtgtggtgccgaacgatgagccggaacgcacccgcatccgtcagctgcatcgaaaattc
tgcggtcacaagagcgattttcttgtttacgtttcgatgtggaatgcattctgcacggac
tgggacggaaaatcttggaacaaacttcgcaagttctgcgataagaacagcatgcacttt
ttgcgcttgcgtgaatgggttgatttgtacgaacagtttagccgcattctcgaagtaaag
tttgaaaataaagtttgtccgttcgattcgttccatcgcgacaatttgcacattgcgctc
ctttccggattcttgggcgggattgcgcatcgcgatattgaaaacggctgttaccgcttg
gtgagcggtcgcgaaacgcatgtgttcccgggcagcgatttgtacgccaagagcgtggaa
tggcttttcagtgccgaagtgcgcgaaacgagccgcacgttcctcacgaaagctgccgaa
atcaagccggaatggattttgcaagtggcagaaccgttctgcacacgccgctggtttgaa
ccgacgtggaacaaggaacgtggctttgtcgaagctgtcgaagaagtgagctttagaggg
cttgtgattagccgtggccatcgtgtggattacgcccgcgtgaatcctgaagattgcgct
cagattttctggcgcgaagcggtagtgatgggcgaggtggcaaggcctttcgatttcatg
aagcacaacgatcacgttgttgaaaatctccatgctctcgaagcgcgtaaacgccagttc
gggcttgctccgagcgaagatgcactcgtggaatactacacgcgaatagcgggtaacgtc
aattccatcaagacgctcaaaagctacatctatgagcacaccgaccagttcttgaaattc
gatgaaaagtattggttggatttgttagacgagagaacgctcgcgggctctctacagacg
aaggacgagagagggtttggaacgaaactttccgactttttgccgaagcaatcccaaacc
tcaaaggcgcgtagtgctgaccccatagccccaactcttggcggatccatcgagcatttc
cgcattggcgagcgcgttgttacaggtgaaatggtctttgacgccactcgcgattgcgat
ggcattacgctctcgttgccttacgatttgctgactgaaatttctccggcaaaatttgcg
atgagcatccagcaatggcgcgaatggatgattgaatccgtgattcgcgaaatgcccaag
agcgtcaagaaattgctcgaagccaaacgcaccgcgattgacgatgaattttttgcagcg
ctcgacaacttcccgcataaagctccgctcttgttgctttacgaagtcctttcgaataca
aaggaaatccgctcgggtgcaaacggcgctagcatcgacgttccgacggtgaatcccgac
aaggaaaatcatttgcgtctgcatttggtcgtttcaaagcctggtttcccggaaccttat
aaactcgaaatttctccggaatggggctcttaccgcatgttcttggcggttcgcccggcg
ttagtgacgtttggcattgacttcccgcttgaggggatgcgctttggctggcgtcttgga
cagtcggctttgatggtgtcggatgaatcccgtttttggcaagctttccgcaagcgtgtg
gaaggcgcgcgcctcgaaaaagcactgcatcttgaaactgcggcgcatcccgcaccgcaa
aagacttcattctccgaagagaaaaaacagctcattgccgaccgcttgaacttgctcgaa
atgggtggtgtttttgcggataactttgaaacggctctcaaaatttgggtggcaaaatcg
cttgccgcagatagccttgatgcgactcgctgtgtgcgctttacaggacttgaattctcg
cgtggtaaaaagattcgcgacttcaagagccttgccgcaaatacccgtagcgaagatgaa
gaaatccgcctctcgcttgtgcgcgccacatacgaatcgggtcttatcggtgctgaagct
tttgtaaagaactggaatttgcttaaagatttcagcgtggaaatgcgcagtggaaacggc
aagtcgaccgtaaaaaataaaaccataattgcgattcatacggcataccaaaaagaactt
attttgtttgaacgtctgcgcgttcttgcagaacttttcaacatagaattcccgttcggc
gcatctcacaattctagcgcatcccgcgactccagcgcatctctcgaaaacactgaactt
tcggctaataccctccgtgagtatttccgcccgtacctcaaggcgcgttacctcaaggac
cacgaactcaaaaatgcccgcgagcttcttggtaaaattgaccgtacgccaacggatgac
ccggaatttgcggaactttacttgcaggcgaaggctctgcttgaagatttcgaaatcctc
aagtacaagcgcaagggcaatgatgccgaagatatcgttgaagaagacgctttagcaagg
ctgaaaggccgttttggaaggctttaa
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integrated database retrieval system
