Flavobacterium sediminis: DI487_14015
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Entry
DI487_14015 CDS
T06625
Name
(GenBank) RNA pseudouridine synthase
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
fse
Flavobacterium sediminis
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fse03009
]
DI487_14015
Enzymes [BR:
fse01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
DI487_14015
Ribosome biogenesis [BR:
fse03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DI487_14015
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
GNVR
DUF4159
Motif
Other DBs
NCBI-ProteinID:
AWM14859
UniProt:
A0A2U8QXR8
LinkDB
All DBs
Position
complement(3013079..3014116)
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AA seq
345 aa
AA seq
DB search
MSNQINDNEPEDELYEHHRFEVSKGQQPLRVDKFLMNLIENVTRSKIQKAADAGNILVND
VPVKSNHKIKPNDIIKVMFEHPPYEHLLKGENIPLDIVYEDEQLIVINKPAGMVVHPGHG
NYSGTLVNALAYHFDNLPMNSSERPGLVHRIDKDTSGLLVVAKTELAMDYLTKQFAEKTS
EREYVALVWGNIEEDEGTIEGNIDRHPTNRMQMAVFPDGERGKPAVTHYKVLERLGYVTL
VSCRLETGRTHQIRVHMKHIGHTLFNDERYGGNAILKGTTFTKYKQFVDNCFKVLPRQAL
HAKTLGFEHPVTKEFIRFDSEIPQDMVDCIEKWRVYSKAQQFEEE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatcagattaacgataacgaaccggaagacgaattatacgaacaccatagattt
gaagtttctaaaggacagcaaccgcttcgggttgataaatttttaatgaacttaattgag
aatgttacccgaagtaaaattcagaaagcagctgatgcaggaaatattctggtaaatgat
gttccggtcaaatccaaccataaaataaagccgaatgatatcattaaggtcatgtttgaa
catcctccttacgaacatttgttgaaaggagagaatattcctttagatatcgtatatgaa
gacgaacagctgatcgttattaacaaacctgccggaatggtggttcatccgggacacgga
aactattccggaactctggtcaatgctttggcttatcattttgacaatttacccatgaat
agttccgagcgtccgggcttagtacaccgaattgacaaagacacatccggattattagtt
gttgctaaaacggaattagcaatggattacctgaccaaacagtttgccgaaaaaacatcg
gaacgagaatatgttgctttagtttggggaaatatcgaagaagatgaaggaacgattgaa
ggcaatattgatcgccatccgaccaacagaatgcaaatggcagttttcccggacggagaa
agaggaaaaccggctgtcactcattataaagttttagaacgattaggttatgttactttg
gtttcctgtcgattagaaaccggaagaacacaccagatcagagttcacatgaaacacatt
ggtcacactctattcaatgacgaacgttatggcggtaatgctattttaaaaggaacaact
tttactaaatacaaacagtttgtcgataattgttttaaagtattaccccgtcaggcgctt
catgccaaaacgttaggttttgaacacccagtcactaaagaattcatacgttttgattct
gaaatcccacaggatatggtagactgtattgaaaagtggcgtgtatattccaaagctcag
caatttgaagaagaataa
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