Frateuria soli: LQ771_00660
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Entry
LQ771_00660 CDS
T08854
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
fsg
Frateuria soli
Pathway
fsg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LQ771_00660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsg03400
]
LQ771_00660
Enzymes [BR:
fsg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LQ771_00660
DNA repair and recombination proteins [BR:
fsg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LQ771_00660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_30
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
UGB38406
LinkDB
All DBs
Position
152114..155650
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AA seq
1178 aa
AA seq
DB search
MSATVACDWTALDLASPGRTLIEASAGTGKTWTISVLYLRLLLEQGLSPAQVVVTTFTDA
AAQELRERLRSRLVWAEDQALAWPDGMPADPSADLAWLHARWHAEPTQVGRDRLRLRLAL
AELDRAPVTTLHGLCRRILDDFPFESGANLQAGELVSSEALLDEWSEDLWRQLQQGAAPP
PPSAPASLTELRRLLRAYLTPGVALWAPDEDELARLLPVEHAAALDAFADRSDVFQPRKS
ALRNALRALAGWLRDRSQELKESTLKNLAAAPWDDQLQPHVRDNPDHVRLLRFVSDACRA
LGYALHAGHVRAWQGWLAQVDSWRAERLAARGQLTFDELIARVGGALARPGRRLAERLFA
QWPVALVDEFQDTDALQYAILDAIYRDHDGAARGRLVMIGDPKQAIYRFRGGDIQAYLAA
AATADQVLRLDVNQRSASGLVEATNQFYALVGKELGRAPATRIRYEPVRAAGRRDRAPLT
VEGKPIARPLQLHFNPDAPGSAPGRRHAALEACAAQIAAMLGDGRHFIGDAPLAPGDIAV
LLPGNADITALRTLLQRYRVPCVGAGRSSVFGLPVARELHVLLHAVEHASDEGAVRAALA
TRLYGLDYATLKALRDEPDAWLVYEQQFAAWRTRWQREGVLAVVRALIERAAPRLLAGDD
GERALTDLRHLGELLQAQADATPGPAQLLDWLGRQRDGEDAGGDAAEERQLRIESDARRV
RLMTLHASKGLEFPVVFLPLMWNHCRNDRDTDVVIHEPLCGRRVVGFGRAARAQYDVEGQ
DERFRVLYVALTRAIHACHVYALPPDRLARANAKESQRDPERSPLDASVERLLQRRAAGE
DLAAVAPRLAWATAGWPWQATPLPQAQGDVPTRRARPLPPARPMAQVYSFSNLTRGAHAG
ALEDQAASDESVAVPADDALATPAPRSAPHPELLALAGVRGADIGNAMHAMFELRAIGTP
LESQKDLIDRCLREFGVRLEDAGREAFIARLARRLQANLDTPLLPGLRLGTLPAHRQLAE
MEFHYVLDDASMAALRDACTALGEPALVPFAGSGHLRGRMTGKIDLILEHDGRYRVLDYK
SNFLGEHVEDYLPGALAVAMDAHHYRFQALLYTVALDRMLRQRLPGYSRERHLGEAIYLF
VRAVGLAPDAGVWRHRFDDALIEAVDNALAGRELEIVA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccaccgtcgcctgcgactggaccgcgctggatctggccagtcccggccgcacc
ctgatcgaggccagcgccggcacaggcaagacctggacgatctcggtgctgtacctgcgc
ctgctgctggaacaggggctttcgcccgcgcaggtcgtggtcaccaccttcactgatgcc
gccgcgcaggagctgcgcgagcgcctgcgcagccggctggtctgggccgaggaccaggcg
ctcgcctggccggacggaatgccggccgacccatccgccgacctggcctggctgcacgcg
cgctggcatgccgagccgacacaggtggggcgggatcgcctgcgcctgcgcctggcattg
gccgagctcgaccgtgcgccggtcaccacgctgcacggcctgtgcaggcgcatcctcgac
gacttccctttcgagagcggggcgaacctgcaggcgggcgagctggtgtcgtccgaagcg
ctgctggatgaatggtccgaggacctctggcgccagttgcagcagggcgccgcaccgcca
ccaccgagcgctccggcctcgctcaccgaacttcgccggctgctccgggcctacctgacg
ccgggcgtggcactgtgggcgccggacgaggacgagctcgcgcggctgttgcccgtcgaa
catgccgctgcgctggacgcgttcgccgaccgcagcgatgtcttccagccgcgcaagtcg
gccctgcgcaacgcgctgcgcgccctcgccggctggctgcgcgaccgcagccaggagctg
aaggagtccacgctcaagaacctcgccgcggccccatgggacgaccagctgcagccgcac
gtgcgcgacaaccccgaccacgtccgtctgctgcgcttcgtcagcgacgcctgccgcgcg
ctcggctacgccctgcacgccggccacgttcgcgcgtggcagggctggctggcccaggtc
gatagctggcgcgccgaacgcctggcagcccgcggccagctcactttcgacgagctgatc
gcgcgggtcggcggcgcactggcgcggcctggccggcggctggccgagcgcctgtttgcg
caatggccggtcgcgctggtggacgagttccaggacaccgacgcgctgcaatacgccatc
ctcgatgcgatctaccgcgatcacgacggcgccgcgcgcggccggctggtgatgatcggc
gatcccaaacaggccatctaccgcttccgcggcggcgacatccaggcctaccttgccgcg
gcagccacggccgaccaggtgctgcggctggacgtgaaccagcgttccgccagcggcctg
gtcgaggcgaccaaccagttctacgcgctggtcggaaaggagctggggcgcgcacccgcg
actcggatccgctatgagccggtacgtgccgccggccggcgcgaccgcgctccgctgacc
gtcgaaggcaaaccgatcgcgcggccgttgcaactgcacttcaaccccgacgcgcccggg
agcgcgccggggcgccgccacgccgcgctggaagcctgcgccgcgcagatcgccgccatg
ctgggcgacggccgccacttcatcggtgatgcgccgctggcaccgggcgacatcgccgtg
ctgctgcctggcaacgccgacatcaccgcgctgcgcacgctgctgcagcgctaccgcgtg
ccctgtgtcggtgccggccgcagcagtgtgttcgggctgccggtggcgcgcgaactgcac
gtgctgctgcatgccgtcgaacacgccagcgacgagggcgcggtgcgcgccgcactggcc
acgcggctgtatggcctggactacgccacgctcaaggcgttgcgcgacgagcccgatgcg
tggctcgtgtacgaacagcagttcgccgcctggcgcacgcgctggcagcgcgagggcgtg
ctcgccgtggtgcgcgcgctgatcgagcgcgccgcgccgcggttgctcgccggcgacgat
ggcgagcgtgcgctcaccgacctgcggcacctgggcgagctccttcaggcgcaggccgat
gccacgcccgggcccgcgcaactgctcgactggctgggccgccagcgcgatggcgaggac
gccggcggcgacgcggccgaggagcgccagctgcgcatcgagtcggatgcgcgccgggtg
cgcctgatgaccctgcacgccagcaaggggctggagttcccggtggtgttcctgcccctg
atgtggaaccactgccgcaacgacagggacaccgacgtggtcatccacgagccgctgtgc
ggccggcgcgtggtcggcttcggcagggcggcccgcgcgcagtacgacgtcgagggccag
gacgagcgcttccgcgtgctgtacgtcgcgctgacccgtgcgatccacgcctgccatgtc
tacgcactgccgcccgaccgactggccagggccaacgcgaaggagtcgcagagggatccc
gagcgttcgccgctggatgcctcggtcgagcgcctgctgcagcggcgggcggccggcgag
gaccttgccgcggtcgcaccgcggctcgcctgggcgaccgccggctggccatggcaggcc
acgccactgccccaggcgcagggcgatgtacccacgcgccgggcccgcccgctgccaccg
gcccgaccgatggcccaggtctacagcttctccaacctgacccgcggcgcgcatgccggc
gcactggaagaccaggctgccagcgacgagtccgtagccgtgcccgcggacgacgcgctt
gcgacgcctgcgccgcgttcggcgccgcacccggaactgctcgcgctggccggcgtgcgt
ggcgcggacatcggcaatgccatgcacgcgatgttcgagttgcgcgccatcggtacgccg
ttggaatcgcagaaggacctcatcgaccgctgcctgcgcgagttcggcgtacggctggag
gatgccgggcgcgaggccttcattgcgcggctggcgcgccggctgcaggccaatctcgac
acgccgctgctgccgggcctgcgcctgggcacgctgccggcgcaccgccagctggccgaa
atggaattccactacgtactggacgatgcctcgatggccgccttgcgcgacgcctgcacg
gcgctgggcgaaccggcgctggtgcctttcgccggcagcggccatctgcgcgggcgcatg
accggcaagatcgacctgatcctcgagcacgacggccgctaccgggtgctcgattacaag
agcaacttcctgggcgagcacgtggaggactacctgcccggcgcactggcggtggccatg
gacgcgcaccactaccgtttccaggcgctgctctacaccgtggcgctcgaccgcatgctg
cgccagcgcctgcccggctactcgcgcgagcggcacctgggcgaggcgatctacctgttc
gtgcgcgcggtgggcctggctcccgacgcgggcgtgtggcggcaccgcttcgacgatgcg
ctgatcgaggcggtcgacaacgcgctggccggtcgcgagctggagatcgtcgcatga
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