Candidatus Protofrankia datiscae: FsymDg_0459
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Entry
FsymDg_0459 CDS
T01530
Name
(GenBank) RecB family nuclease, putative
Organism
fsy
Candidatus Protofrankia datiscae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNase_H_2
AAA_30
Viral_helicase1
AAA_19
AAA_16
nSTAND3
UvrD_C_2
AAA_22
MobB
HHH_5
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AEH08008
UniProt:
F8B5F2
LinkDB
All DBs
Position
complement(538757..542593)
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AA seq
1278 aa
AA seq
DB search
MWGNMQRFDDRWVVSASDVVDALECGHRLALSHAHAAGVPLDDASTGEPITAGEADELLV
RHGDAHERRWLAHLVGLFGADAVATIERPEGGLTALTAAWEQTRAAVAAGAAVSYQAVLF
DGSYQGRPDFLIAAHLDPVTGARTGEATPGRYEPYDAKLARHARPAAVVQLASYARALPA
IGVAAAHRIHLLLGDGRLESLRVEDVAPMVDHARGRLTAQLARPPAVPQPSWGDPRPACG
ACAFTAHCERGREAARDLSLVAGLRTDQRRKLRTAGITSVEDLAAADDERRPASMAAATF
AGLRLQAQLQIIQDATRTDDDRTGTVTVRVVAPDGLASLPTPDPGDIYFDMEGDPYALDN
AGLEYLFGAVTLDATAVGTDAVGAAADSGDDTGRPGHGPAAGFTTDAVEVFHPFWAHDRA
EEKRAFEQFVDWVLRRLAYHPRAHIYHYAPYEPNALKRLAARHGTRERQVDALLAGHRLV
DLYTVVRRSLKISQRSYSIKYLEPLYLPGARGAEVKTAVDSIVAYENVLAHRAAGEQAAA
EHVLNEIAEYNRVDCVSTHRLHRWLLDLRAAEGIMHAPAADAGEGAADTLPDPADATVDA
LVAGLPEDPATWSDDERAQALLAAAVGYHRRENKPAWWEFFAWLTADRAALEADDGCAVP
LEWTVVEGWSAPTGRQKKARRGLLASLDPDHTHPFTTGERVRLLYPDTVGDGGTVGPVGD
DGVAVRTRDAEIERSEPDRLLVREIAAPEDNSAEPPLAVLPGPPVRPEPKPAAIAELAQM
VAAVLPTPHPVPAPRQAEPEPPDGPEPPDGPKPPDGPKLPDGAAMDLLRRRPPRLVGRPA
GRAGLPDPAEHGGDLIATVLAAVDALDNSYLAVQGPPGAGKTYLAGRLIRHLVGAGRTVG
VCSTSHKAIENTMLAAIGPPTAVTADDPVSADGTATAGRGVAAAKKLRSGRKPDPDTPWD
TPRDIRALASWRAAHPDGHLVGDTAWAFANPALRAEPFDVMIIDEAGQFALADTLAVAGA
ARNLVLLGDPQQLPQVVAGIHPDGADASALSHLLGEEEIIPAEFGYFLDLTRRMHPQVCA
PVSALAYQGRLHAHPVAAGRRVDGVAAGLYLHDVVHHGNTTRSDPEVDAVRDLLTGILGR
RFVDGAAERVLRADDVLVVAPYNRQVRAIEHALGKAGIHGVRVATVDRFQGQEAPVAIMS
LTTSSAAEAPRGLDFLLSRNRMNVALSRAQVLAVLVMSPALLDAAPRTVDELRLLAGLVR
LRADARTDLTDQVAAPVR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgtgggggaacatgcagcggttcgacgaccggtgggtggtgtcggcgagcgacgtcgtc
gacgcgctcgagtgcgggcatcgactcgcgctgtcgcacgcccacgcagccggggtaccg
ctggacgacgccagcaccggcgagccgatcacggccggtgaagcggacgagctgctggtc
cgccacggtgacgcacacgagcggcgatggctcgcgcatctcgtcggcctcttcggcgcc
gacgccgtcgcgacgatcgaacgccccgagggcggcctgaccgcgctgacggcggcctgg
gaacagacccgcgccgccgtcgccgccggtgccgccgtcagctatcaggcggtgctcttc
gacggctcctaccagggacggcccgacttcctgatcgccgcgcacctcgacccggtcacc
ggcgcgcgcaccggcgaggccacacccggccgttacgaaccgtacgacgccaagctcgcc
cggcacgcccgccccgcggccgtcgtgcagctggcctcctacgcccgggcactgccggcg
atcggggtggccgccgcgcatcgcatccacctgttactcggcgacggccggctggagtca
ctgcgggtcgaggacgtcgcacccatggtcgaccacgcccggggcaggctgaccgcgcag
ctcgcgcgcccgccggcagtcccccagccgtcctggggcgatccgcggcccgcctgcggg
gcctgcgcgttcaccgcccactgcgagcggggccgggaagccgcccgcgacctgtcgctg
gtcgccggcctgcgcacggaccagcggcgcaagctgcggaccgccggtatcacctcggtc
gaggaccttgccgccgcggacgacgagcggcgtcccgcctcgatggcggcggcgacgttc
gccgggctgcggctacaggcacagctacagatcatccaggacgcgacccgcaccgacgac
gaccggaccggcaccgtgaccgtccgggtggtcgcgccggacgggctcgcgtccctgccc
acaccggatcccggcgacatctacttcgacatggaaggggatccgtacgcgctggacaac
gccggcctggagtacctcttcggtgccgtcaccctcgacgcaaccgctgtcggcacagat
gctgtcggcgcagccgccgacagcggcgacgacacgggccgccccggccacggcccggcg
gcgggcttcaccaccgacgccgtggaggtcttccacccgttctgggcgcacgaccgcgcc
gaggagaagcgcgcgttcgagcagttcgtcgactgggtgttgcgccgactcgcgtaccat
ccccgagcgcacatatatcactacgcaccgtatgagccgaacgcgctcaaacggctcgcg
gccagacacggcacccgcgaacggcaggtggacgccctgctcgccgggcaccggctggtg
gacctgtacacggtcgtccgacgcagcctgaagatctcccaacgctcgtattcgatcaag
tatctggagccgctgtacctgccgggggctcgcggcgccgaggtcaagaccgccgtcgac
agcatcgtcgcctacgagaacgttctggcccaccgcgcggccggcgagcaggcggccgcc
gagcacgtcctcaacgagatcgccgagtacaaccgggtcgactgcgtgtccacccaccgt
ctgcaccgctggctgctcgacctgcgcgcggccgaagggatcatgcacgcgccggcggcg
gacgccggggagggcgccgccgacacactgccggatcccgccgacgcgaccgtcgacgcc
ctggtcgccggcctgcccgaggacccggcgacctggagcgacgacgagcgggcacaggcc
ctgctggcggctgccgtcggctaccaccggcgggagaacaagcccgcctggtgggagttc
ttcgcctggctcaccgccgaccgggccgcgctggaggccgacgacggctgcgccgtcccg
ctggagtggaccgtcgtcgagggctggagcgcccccaccggacggcagaagaaggcccgg
cgcggcctgctcgcctcgctcgaccccgaccacacccatccgttcaccaccggcgagcgg
gtccggctgctctacccggacaccgtcggtgacggtggcactgtcgggccggttggtgac
gatggcgtcgccgtccgcacccgggatgccgagatcgaacggagcgagcccgaccggctg
ctcgtccgggagatcgcggcaccggaggacaacagcgccgagccaccgctggcagtgctg
cccggcccaccagtgcgcccggagcccaaaccggccgcgatcgccgaactcgcccagatg
gtggccgccgtcctgcccaccccgcatccggtgcccgccccgcggcaggccgagccggag
ccgccggacggaccggagccgccggacggaccgaagccgccggacggaccgaagctgccg
gacggagctgccatggacctgctgcgccgacgcccgccgcggctggtcggccggcccgcc
gggcgtgccggactgccggatccggccgagcacggcggggatctgatcgccaccgtgctc
gccgccgtagacgccctggacaactcctacctcgcggtccaggggccgccgggtgctggc
aagacctacctggccggcaggctgatccgccacctggtcggggcggggcgcaccgtcgga
gtgtgctcgaccagccacaaggcgatcgagaacaccatgctcgccgcgatcggcccccct
accgcggtaaccgcggacgatccggtgtccgcggacggtacggcgaccgccggccggggt
gtcgccgcggcgaagaaactgcgatccggccggaaacccgacccggacacgccgtgggac
accccgcgcgacatccgggcgctggcgtcctggcgggccgcgcacccggacgggcacctc
gtcggcgacaccgcctgggcgttcgccaacccggcgctgcgcgcggaaccgttcgacgta
atgatcatcgatgaggcggggcagttcgcgctcgccgacaccctggccgtggccggcgcc
gcgcgcaacctcgtgctgctcggcgacccgcagcagctcccgcaggtcgtcgcgggcatc
cacccggacggcgcggacgcctccgccctgtcccacctgctcggcgaagaggagatcatc
ccggccgagttcggctacttcctggacctgacccggcggatgcacccacaggtgtgcgcg
ccggtgtcggcgctggcgtaccagggacgcctgcacgcgcacccggtcgccgccggccgc
cgcgtcgacggtgtggcagccggcctgtacctgcacgacgtggtccaccatggcaacacc
acccggtccgatccggaggtggacgccgtccgtgacctgctcacgggcatcctcggccgg
cgcttcgtcgacggcgcggccgagcgcgtcctgcgcgccgacgacgtgctggtggtcgcc
ccgtacaaccggcaggtacgcgcgatcgagcacgcactgggcaaggccggcatccacggg
gtccgggtcgccacggtggaccgcttccaggggcaggaagcgccggtggcgatcatgtcg
ctgacgacgtccagtgcggccgaagccccgcgcgggctggacttcctgctctcgcgcaac
cggatgaacgtcgcgctctcccgggcgcaggtgctcgcggtcctggtgatgtcaccggcg
ctgctggacgccgctccccggacggtggacgagctgcgcctgctcgcgggtctggtacgg
ctgcgggccgatgcccggaccgacctcaccgaccaggtggccgcaccggtcaggtga
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