Candidatus Protofrankia datiscae: FsymDg_1459
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Entry
FsymDg_1459 CDS
T01530
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fsy
Candidatus Protofrankia datiscae
Pathway
fsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FsymDg_1459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsy03019
]
FsymDg_1459
03400 DNA repair and recombination proteins [BR:
fsy03400
]
FsymDg_1459
Enzymes [BR:
fsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FsymDg_1459
Messenger RNA biogenesis [BR:
fsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FsymDg_1459
DNA repair and recombination proteins [BR:
fsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FsymDg_1459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
Glycos_transf_N
Motif
Other DBs
NCBI-ProteinID:
AEH08926
UniProt:
F8B2U4
LinkDB
All DBs
Position
complement(1709256..1711163)
Genome browser
AA seq
635 aa
AA seq
DB search
MTSPLVDSPADAPPLADSDVPLADGASDAARVLRRVFGYESFRDGQQEIIDHVVSGGDAL
VLMPTGGGKSLCYQIPALVRPGTGVVVSPLIALMQDQVDALRALGVRAGFLNSTQEFDER
REVESAFLAGELDLLYLAPERLRVEATVTLLDRGMIALFAIDEAHCVAQWGHDFRPDYLL
LSELRERWPDVPTVALTATATPATHAEITSRLGLEDARHFVADFDRPNIQYRIVPKKDPK
AQLLTLLRAEHTGDAGIVYCLSRSSVEKIAEFLVANGVAALPYHAGLDARARAEHQARFL
REDGIVMVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQ
DVVQLRKLIDASAGDLTHRRRLSTHLDAMLALCETVECRRTGLLAYFGQQRTAPCGNCDT
CLTPPQTWDGTIAAQKLLSAVLRLQRERRQKFGAGHLVDILLGRKTAKVIQHDHDTLKVF
GVGTELGEPEWRGVVRQLLVQGLLAVEGEHGTLVLTGASADVLRGQRTVLMRREPEPAAK
AASTGAAASKGAKSRRVAVAELSEDAMPVFERLRTWRAAAAKEQGVPAYVIFHDATLREI
ASRPPATLAELSTISGVGEHKLARYGQQILDALAE
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcccctctggtcgacagcccggccgacgccccgccgctggccgacagcgatgtc
ccgctggctgacggcgcgagcgacgccgcgcgggtgctgcgccgtgtcttcgggtatgag
tcgttccgggacggccagcaggagatcatcgatcatgtcgtcagcggtggcgacgcgctc
gtactgatgccgaccggtggcggcaagtcgctgtgctaccagatccccgccctggtacgg
ccgggcaccggcgtcgtggtgtcaccgctgatcgcgctgatgcaggaccaggtcgacgcg
ttgcgggcgctcggcgtgcgggcggggttcctcaactccacccaggagttcgacgagcgc
cgcgaggtggagtccgccttcctcgccggtgagctcgacctgctctacctggcaccggag
cggctgcgcgtcgaagcgacggtcaccctgctcgacaggggcatgatcgcgctgttcgcg
atcgacgaggcgcactgcgtcgcgcagtgggggcacgacttccggcccgactacctcctg
ctgtccgagttacgcgagcgctggccggacgtgccgacggtcgcgctgaccgccaccgcg
accccggcgacgcacgccgaaatcacctcccggctcggtctggaggacgcccgccacttc
gtggccgacttcgaccgcccgaacatccagtaccgcatcgtgccgaagaaggacccgaag
gcgcagctgctgacgctgctgcgcgccgagcacaccggggacgcgggcatcgtctactgc
ctgtcacgatcgtccgtcgagaagatcgccgaattcctggtggcgaacggcgtcgcggcg
ctgccgtaccacgccgggctcgacgcgcgcgccagagccgagcaccaggcccgcttcctg
cgggaggacggcatcgtcatggtcgcgaccatcgccttcggcatgggcatcgacaaaccg
gacgtacgcttcgtcgcccatctcgacctgcccaaatccgtcgaggggtactaccaggaa
accgggcgcgccgggcgggacgggctgccctcgaccgcgtggctggcctacggtctccag
gacgtcgtccagttgcgcaagctcatcgacgcgtccgcgggtgacctcacgcaccgtcgg
cgactgagtacccacctcgacgccatgctcgcgctgtgcgagacggtcgagtgccgccgc
accgggctgctcgcctacttcgggcagcagcgcaccgccccgtgcggcaactgcgacacc
tgcctgacacccccgcagacgtgggatggcacgatcgccgcccagaagctgctgtcggcc
gtgctccggctgcagcgggagcgccgccagaagttcggcgcgggccacctcgtcgacatc
ctgctcggcaggaagacggccaaggtgatccagcacgatcacgacacgctgaaggtcttc
ggtgtcggcaccgagctcggtgagcccgagtggcgcggtgtggtgcggcaactgctggtc
caggggctgctggcggtcgagggcgagcacggcaccctcgtactcaccggcgcgagcgcc
gacgtgctgcgcgggcagcgcacggtcctgatgcggcgcgagccggagcccgccgccaag
gccgcgtccacgggcgcagccgcgtccaagggcgcgaagtcccgccgcgtcgccgtggcc
gagctgtcggaagacgcgatgccggtgttcgagcggctccgcacctggcgcgcggccgcc
gcgaaggaacagggcgtcccggcctatgtgatcttccatgacgccaccctgcgcgagatc
gcgtcacgcccgccggccacgttggccgaactgtccaccatcagcggcgtcggcgagcac
aaactcgccaggtacgggcaacagatcctcgacgccctcgccgagtga
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