Francisella tularensis subsp. novicida U112: AW25_1187
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Entry
AW25_1187 CDS
T03874
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ftx
Francisella tularensis subsp. novicida U112
Pathway
ftx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ftx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW25_1187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ftx03019
]
AW25_1187
Enzymes [BR:
ftx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AW25_1187
Messenger RNA biogenesis [BR:
ftx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AW25_1187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
P-loop_SecA
MerR-DNA-bind
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJI60413
UniProt:
A0Q654
LinkDB
All DBs
Position
complement(1241278..1242603)
Genome browser
AA seq
441 aa
AA seq
DB search
MKFSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII
QRLLDQPKAQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKL
RKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ
TLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKD
QNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVAT
DIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEH
LIGHLLPRAELEGFEATHNVPITSMSHKTKAKKIDEVKIIAAKRAKKNNNNKKPSNKNDF
AKKIRQKIHQNKSVRKPKAKD
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctcagatttagatttaaattccttaatatgtagcgctttagaaaagaagggt
tatacaaaaccaactcctattcaagcacaagcgataccaatagttctaaagggtaatgat
gttatggcatcagctcaaacaggaacaggaaaaacagcaggctttacattaccaattatc
caaagactccttgatcaacccaaagctcaagcaaataggatcaaaacattaatcctaact
ccaacaagagagctagcagcacaaattcaagaacaaattcaaatatatgccgcaaataca
catattcgttcagcagtaatatttggtggagtgagtattaatcctcaaatgatgaaatta
cgtaaaggtgtcgagattttgatagctactcctggaagattacttgacttatatagtcaa
aatgctgtcaagtttgatagtttaaatacctttgttttagatgaagcagacagaatgtta
gatatgggtttcattaatgatttaaaaaaaatccataaacttttaccgaaaaagttacaa
acactaatgttctcagcaacattttcatcagagataaaaaatcttgctaatgaatttcta
aataatccccagtttgtatcagctgatgttgtaaatacgacggtcaaaaagattactcag
aaaatttatacattagataaatcaaataaaattaatgcgctaatctcactaataaaagat
cagaatctacatcaagtactagttttctcacggactaaaaatggagcaaataaaatttcg
gaaaagttaaataatgctggcattagtagtagtgctattcatggtaataaaagtcaaacc
gctcgtactaaagctttagctgattttaaatctaatgatataaatgtcttagttgctact
gatatcgcagctcgtggaattgatattgcccaacttccttgtgtgataaatcttgattta
ccaaatgtcgctgaagactatgtccatagaataggtagaactggcagagcaggacaagag
ggtttagcaatttctcttgtaagtgctgatgaagtcgaatctttatcaaacattgaacat
ctgatcgggcatcttttaccacgagcggaactagaaggctttgaggcaactcataatgta
cctataacaagtatgtcacacaaaaccaaagctaagaaaatcgatgaagttaagataata
gctgcaaaaagagcaaaaaagaacaataacaacaaaaaaccttctaataagaatgatttt
gctaaaaaaattagacaaaaaatacatcaaaataaaagtgttagaaaaccaaaggcaaaa
gattaa
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