Fusobacterium ulcerans: C4N20_04300
Help
Entry
C4N20_04300 CDS
T05433
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ful
Fusobacterium ulcerans
Pathway
ful03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ful00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4N20_04300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ful03019
]
C4N20_04300
Messenger RNA biogenesis [BR:
ful03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4N20_04300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
eIF-1a
Peptidase_S49_N
DivIC
Motif
Other DBs
NCBI-ProteinID:
AVQ27350
UniProt:
A0A2P1S1P8
LinkDB
All DBs
Position
complement(944093..945967)
Genome browser
AA seq
624 aa
AA seq
DB search
MIRRNKDTEKEYSKKKKTETSGIKEVKDIKEKLKAIKAGIKELKEDKEESKAEVKAEKTI
EVKETKGTKEEKMYVIPLGGLEEVGKNMTVIQYRDEIIIIDSGVTFPDDNLLGIDLVIPD
FSFIENNKDKVKGLFITHGHEDHIGSIPYLYQKIDKSVPMFGGKLTLALAKSKFDNPGFS
KELPKMKEVKGRSKVKVGKYFTVEFIKVTHSITDAYSLAISSPAGVVFHTGDFKIDLTPV
DSEGVDFARLSQIGEQGVDLMLSDSTNSEVEGFTPSERSVGEAFKQEFSKAKGRIIVAAF
ASHVHRLQQIINTAEEYGRRIAIDGRSLVKVFEIASNLGYLRIPEGMMVALSEVDGLKDN
KVVILCTGTQGEPMAALSRIAKNMHKHIKIKEGDTVIISATPIPGNEKAVSNNINNLLKY
DAEVVFKKIAGIHVSGHGSKDEQKLMLNLIKPRYFMPVHGEHKMLKAHKDTAIETGVPKN
NVIIAQNGSKVEVTKSAVKIKGKVNAGSTLVDGLGVGDIGNIVLKDRQQLSQDGVVVIVF
TTSKETGKIIAGPDIVTRGFVYSKESDDIIKEAIEAIKAKLSNIEGHSTKDWNTFKNTTR
DIASKYFYNKTKRNPVVLPIIMEI
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgataagaagaaacaaagatacagaaaaagaatattcaaaaaagaaaaaaacagaaact
agtggaataaaggaagtaaaagatataaaagaaaaattaaaagcgataaaagctggaata
aaagaattaaaagaagataaagaagaaagtaaagctgaagttaaagcagaaaaaactatt
gaagtaaaagagacaaaaggaactaaagaagagaaaatgtatgttattcctctaggtggt
cttgaagaagtaggaaaaaatatgacagtcatccaatatagagatgaaataataataata
gattcaggggtaactttcccagatgataatttgttgggaatagatttggtaatacctgac
ttttcatttatagagaataataaagataaagtaaaaggtctttttataactcatggacat
gaagatcatataggatcaattccatatctttatcaaaaaatagataaaagcgttccaatg
tttggagggaagcttacattagctctagctaaatcaaaattcgataacccaggattttca
aaagaacttccaaaaatgaaagaagtaaaaggaagaagtaaagtaaaagtaggaaaatac
tttacagttgaatttataaaggtaactcactctataactgatgcttactcattagcaata
tcatcaccagcaggagtagtatttcatacaggagactttaaaatagatcttactcctgtg
gacagtgaaggagtagactttgcaagactttctcaaataggagagcagggagtagactta
atgctttctgactcaacaaactcagaagtagaaggatttacaccatcagaaagaagtgta
ggagaagcatttaagcaggaattctcaaaagctaaaggaagaataattgtggcagctttt
gcatcacatgttcatagattgcagcagataataaatacagcagaagagtatggaagaagg
atagctattgatggaagaagtttggtaaaagtatttgaaatagcttctaatcttggatat
cttagaattccagaaggaatgatggtagcattatcagaagtagatggcttgaaagataat
aaagtagttatcttatgtacaggaacacagggagagccaatggctgctctatctagaata
gctaaaaatatgcataagcatataaaaataaaagagggagatacagtaataatttctgca
actccaataccaggaaatgagaaagctgtttctaataatataaataatcttctgaaatat
gatgctgaagttgtatttaagaaaatagctggaatacacgtttcaggacatggaagcaaa
gatgagcagaaacttatgcttaatcttataaaaccaagatattttatgccggtacatgga
gagcataaaatgctgaaagctcataaagatacagcaatagaaacaggagtgccaaaaaat
aatgttataattgctcaaaatggaagtaaagtagaagtaacaaaatcagcagtaaaaatt
aaaggaaaagtaaacgctggttctacacttgtagacggattaggtgtaggggatatagga
aatatagttttaaaagacagacagcaattatcacaagatggagtagtagtaatagttttt
acaactagcaaagaaactggtaaaataatagcaggtcctgatattgtaacaagaggattt
gtatattctaaagaatctgatgatataataaaagaagctattgaagcaataaaagctaaa
ttaagcaacatagaaggtcattcaacaaaagactggaatacattcaaaaacactactaga
gatatagcatcaaaatatttttataataaaacaaaaagaaatccggtagtactaccgata
atcatggaaatataa
DBGET
integrated database retrieval system
