Fusobacterium ulcerans: C4N20_10705
Help
Entry
C4N20_10705 CDS
T05433
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ful
Fusobacterium ulcerans
Brite
KEGG Orthology (KO) [BR:
ful00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ful03016
]
C4N20_10705
Enzymes [BR:
ful01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C4N20_10705
Transfer RNA biogenesis [BR:
ful03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C4N20_10705
Prokaryotic type
tRNA splicing ligases
C4N20_10705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Sey1_3HB
YcbB
HPF1
Motif
Other DBs
NCBI-ProteinID:
AVQ28534
UniProt:
A0A2P1S565
LinkDB
All DBs
Position
2315045..2316259
Genome browser
AA seq
404 aa
AA seq
DB search
MRTKFYEITGKYNTAKVFTNVIENEAIEQIKTLCNQEFITGSKIRIMPDVHSGAGCTIGT
TMTITDKVIPNLVGVDIGCGMETVMITDKEIDLEKLDKLIYEKIPSGHNIRKIPHDLINE
IDLNQLKCTGHVKMDRAIRSIGTLGGGNHFIEAGKDEEGNIYITVHSGSRHLGLEVANYY
QKMGYKALNKVSDIDIEKIIEQLKSEGREKEINKTIKEIKKQIITDIPQALAYVSEELFD
DYIHDMKLIQKFAVLNRKAMMDEIIKGLGTEVAEEFTTIHNYIDTDMMILRKGAVSAKKG
EKLLIPINMRDGSLVCIGKGNEDWNYSAPHGAGRLMSRTKAKKTFELKNFKKEMEGIYTT
SVNKDTLDECPMAYKAMEDIIKNIGDTVDIIKRIIPIYNFKAGE
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgagaactaaattttatgagataactggaaaatataacacagctaaagtttttacaaat
gtgatagaaaatgaagctatagaacaaataaaaacattgtgtaaccaggaatttataact
ggaagtaaaatacgtattatgcctgatgtacattctggagcaggatgcactattggaact
acaatgactataactgataaagtaatacctaatttagtaggggtagatataggctgtgga
atggaaacagttatgataacagataaagaaattgatttagaaaaattagataaacttatt
tatgaaaaaataccttcaggtcataatataagaaaaattcctcatgatctgataaatgaa
attgatttgaatcaattgaaatgtacaggacacgtgaaaatggatagagctataagaagt
ataggaactttaggtggaggaaatcattttattgaagctggaaaagatgaggaagggaat
atctatataactgttcattcagggagcagacatttaggattagaagtagcaaattattat
caaaagatgggatataaagcccttaataaagtaagtgatatagatattgaaaaaatcata
gaacagctgaaaagtgaaggaagagaaaaagaaataaataaaacaattaaagagataaaa
aaacagataattacagatattccacaagctttggcgtatgtatcagaagagctttttgat
gactatatacatgatatgaaattgatacaaaaatttgctgtactaaatagaaaagctatg
atggatgaaataataaaagggctgggaacagaagtggcagaagaatttaccacaattcat
aactatattgatactgatatgatgatattgagaaaaggagcagtatcagctaagaaagga
gaaaaacttttaataccaataaatatgagagatggaagtcttgtctgcataggaaagggg
aatgaagattggaactattcagctccacatggtgctggaagattgatgagccgtacaaaa
gcgaaaaagacttttgaattgaagaattttaaaaaagaaatggaaggaatatacactacc
tctgtaaataaagatactttagatgaatgtcctatggcatacaaagctatggaggatatt
ataaaaaatataggagatactgtagatattataaaaagaattataccaatatataatttt
aaagctggagaataa
DBGET
integrated database retrieval system
