Fusobacterium varium: FV113G1_08280
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Entry
FV113G1_08280 CDS
T05280
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fva
Fusobacterium varium
Pathway
fva03410
Base excision repair
fva03430
Mismatch repair
fva03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FV113G1_08280
03430 Mismatch repair
FV113G1_08280
03440 Homologous recombination
FV113G1_08280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fva03400
]
FV113G1_08280
DNA repair and recombination proteins [BR:
fva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FV113G1_08280
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FV113G1_08280
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FV113G1_08280
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BBA50481
LinkDB
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Position
complement(939352..941934)
Genome browser
AA seq
860 aa
AA seq
DB search
MRNTRWVYRENPLKNNEDIQNLNLDKDILNLLYNRNIIEKEEIRNFLNVNIKNMADPFSL
KDVDKAVNRLLQAKENNETVWVYGDYDVDGITSVSLCFLALSELGMNVRYYIPLRDEGYG
LNIEAINYIKNEGGTLIITVDCGISSHEEIAHASALGIDMIVTDHHEINNGNPEALAVIN
PKREDNEYTFKYLAGVGTAFMMMSALFKTLDKEEDVYKYLDIVAIGTVADIVPLLKENRI
FVKEGLEYLKRSRWLGLNMLIKKIFEDYDIRKFNTYDIGFIIAPIFNAVGRLEDAKKAVE
LFIEKDHRICSAAIKDLLEKNSERKEIQEEIFEKAIEKIENEKLYEKSILIVGEKGFHHG
VIGIVASKVLDRYYKPTIIMEIKPDEGIATASCRSIEGFNIIEAINNFSDLLIKYGGHSG
AAGFSIKIENIEEFSIKLNDYAKAAMEDSTLIKPIKVDRPLPFYKISYDFLDKISLLEPF
GFGNPSPLFSLNNCQFDGLRLIGKDKKHIMMNIIKNGNEIRNCVWFNSDDVFENLVNLRN
IDIAFKLKLETYKDRYQYKMYVEDIRETIQTSNEIENIFDLYDIQFPIETVIYTRRKMDS
PKIRLTFSEQGITVANDRTYLGNLDTQTEYILNSLKKMYNIEFSAAVKDVILKDENYNVH
ILIDKDYSFSSYAIKQSELFKEIKNFLVGEFNYNYIQKKTLASVFKDKNNTVTIMERGRG
IETIIQTIGLYYKNINEKALLVTKENISKKTISSIGIGDKFISGYDFYIFLNPEKSEIEK
YIDRKILVITEDKTFNIQGFTHITDNYEIPSNIKFLSEEELKNKNIIFSKKLPLDKKNQV
IKNLKTYMEIYSTKDILPYL
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatacaagatgggtttatagagaaaatcctctgaaaaataatgaagatattcag
aatcttaatttagataaagatattcttaatcttctatataatagaaatataatagaaaaa
gaagaaataagaaattttctgaatgtaaatataaagaatatggcagatcccttttcttta
aaagatgttgacaaagctgtcaacagacttcttcaagcaaaagaaaacaatgaaacagtg
tgggtatacggagattatgatgttgatggaattacatcagtttctttatgttttttagct
ctaagcgagctgggaatgaatgtaagatactatattcctttaagagatgaaggctatgga
ctgaacatagaagcaataaattatataaaaaatgaaggaggaactctgatcataactgtt
gactgtggtatctcctcacatgaggaaatagctcatgcttcagctttaggtatagatatg
atagttactgaccatcatgaaataaataacggtaatcctgaagctctggcagttatcaat
cctaaaagggaagataatgaatatacatttaaatatttagctggagtaggaactgctttt
atgatgatgtccgccctttttaagactcttgataaagaagaagatgtttacaaatatctt
gatatagttgcaataggtactgtagcagatattgttccccttcttaaagaaaatagaata
tttgtgaaggaaggattggagtatctcaaaagaagcagatggcttggactcaatatgctt
attaaaaaaatttttgaagattatgatataagaaaatttaatacctatgatataggtttt
ataatagctcctatatttaatgctgttggaagattggaagatgctaaaaaagctgttgaa
ctttttattgaaaaagaccacagaatttgttcagcagcaataaaagatcttttagaaaaa
aacagtgagagaaaagaaatacaggaagaaatatttgaaaaagctattgaaaaaatagaa
aatgaaaaactttatgaaaaaagtattctcatagtaggagaaaagggattccatcatgga
gttattggtatagttgcatctaaagttctggatagatactacaaacctactataattatg
gaaataaaacctgatgagggaattgccactgcttcatgcagaagtatagaaggattcaat
attattgaagctattaataatttttctgatcttctcatcaaatatggaggccacagtggt
gctgctggtttttcaataaaaatagaaaatattgaagaattcagtataaaactcaatgac
tatgccaaagctgcaatggaagacagcactctcataaaaccaattaaagttgacagacca
cttcctttttacaaaatatcatatgactttttagataaaatatctcttttagagccattt
ggtttcggcaatccttctcctttattctcattgaataactgtcaatttgatggattaaga
ctaataggaaaagataaaaaacacattatgatgaacatcataaaaaatggaaatgaaata
agaaattgtgtatggttcaatagtgatgatgtttttgaaaatcttgtcaatttaagaaat
atagatatagcctttaaattaaaattagaaacttataaagacagatatcaatataaaatg
tatgttgaagatataagagaaaccattcagacttcgaatgaaatagaaaatatttttgat
ctttatgatattcaatttcctatagaaacagtaatttatacaagaagaaagatggattca
ccaaaaataaggcttactttctctgaacagggaataactgtagctaatgatcgtacatat
cttggaaatttagatactcagactgaatatatactaaattctttaaaaaaaatgtataac
attgaattttctgctgctgtaaaagatgttatattaaaagatgaaaattataatgttcat
attcttattgataaagattattctttttcatcctatgccataaagcaaagcgagctgttt
aaagaaataaaaaactttcttgttggagaatttaattataattatatccaaaagaaaact
ttagcatctgtttttaaagataaaaataatacagtgacaattatggaaagaggaagagga
attgaaactataattcaaactataggactttattacaaaaatataaatgaaaaagctctt
cttgtaacaaaagaaaatatatctaaaaaaactatttcaagtataggaataggggataaa
tttattagtgggtatgatttttatattttccttaatcctgaaaaatctgaaatagaaaaa
tatattgatagaaaaattctagtaataacagaagataaaacttttaatatacaaggattt
actcatattacagataattatgaaattccatcaaacataaagtttctatctgaagaagaa
ctaaaaaataaaaatataatttttagtaaaaaactccctttagacaaaaaaaatcaagtc
attaaaaatttaaaaacttatatggaaatatattcaaccaaagatatacttccgtattta
taa
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