Galbibacter sp. bg1: HX109_08385
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Entry
HX109_08385 CDS
T06675
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
gaa
Galbibacter sp. bg1
Brite
KEGG Orthology (KO) [BR:
gaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gaa03009
]
HX109_08385 (rlmD)
Enzymes [BR:
gaa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HX109_08385 (rlmD)
Ribosome biogenesis [BR:
gaa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HX109_08385 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Met_10
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
TRAM
PrmA
UPF0020
PCMT
Methyltransf_11
Methyltrans_SAM
FtsJ
N6_N4_Mtase
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
QLE01580
LinkDB
All DBs
Position
complement(1894624..1896033)
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AA seq
469 aa
AA seq
DB search
MSRKNRKQFFEQVEVIDAGAKGKGVAKAPDGRVIFLPYAVPGDVVDVQTFKKRKAYFEGK
IASFHTESPKRTTPECQHFGVCGGCKWQNMGYEHQLFYKQKEVENNLKRIGKIDLPEFTP
ILGSENIYFYRNKMEFSFSNSRWLTQKEIESEEHVDDKNALGFHIPGMWDKILDIKKCHL
QEDPSNAIRLAVKNFAVANNLAFFNPREQSGLLRTMMIRTSSTGEIMILIQFYDDNATER
ELLLDHLKETFPEITSLQYVINQKPNDTIYDQEVICYAGRDHIFEEMEGLKFKINAKSFY
QTNSAQAYELYKITRNFAGLSGEELVYDLYTGTGTIAQFVAKDAKKVVGVEAVPEAIEDA
KANAQLNGIENVSFYAGDMKAVFNEGFIQRNGKPDVIITDPPRDGMHKDVVQQILNIAPK
KVVYVSCNSATQARDLLLMDAMYKVTKVQPVDMFPQTHHVENVVLLEKR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaaagaatagaaaacagttttttgagcaggttgaagtaatagatgctggcgcc
aaaggaaaaggcgtggccaaagcacccgatgggcgtgttatttttcttccctatgccgtg
cccggtgatgtagtagacgtgcaaacctttaaaaagcgtaaggcttattttgaaggaaaa
attgccagttttcataccgaatcccctaaaagaaccactccggaatgtcaacattttgga
gtctgtggaggatgtaaatggcaaaatatggggtacgagcatcagttgttttacaaacaa
aaagaagttgaaaacaatttgaagcgtatcggtaaaatcgatcttcctgaatttactcct
attcttggttcagaaaacatctatttttacagaaataaaatggaattctctttttcgaac
agccggtggttaacccaaaaagaaattgaaagcgaggaacatgtagatgataaaaatgct
ttgggctttcacattcctggaatgtgggataaaatattggacattaaaaaatgtcatctc
caagaagatccttccaatgccattcgtctggcggttaaaaattttgcagttgcaaataat
ttagcatttttcaatcctagagaacaaagcggactgttaagaaccatgatgatacgaaca
tcctccaccggggaaataatgattcttattcagttttacgatgacaatgctacagaaagg
gaactgcttttagaccatctaaaagaaacatttccagaaataacttccttgcaatacgtg
atcaatcaaaaaccaaacgatactatttacgatcaagaggttatttgttatgctggtagg
gatcatatttttgaagagatggaaggccttaaatttaaaattaacgctaaatctttttac
caaacaaattctgcccaagcatacgaactttataaaataactagaaactttgccggctta
tctggagaggagttggtgtacgatctttatacaggaacgggaacaatagctcaatttgta
gccaaagatgctaaaaaagtagttggcgttgaagcggttccagaggcaattgaagatgcc
aaagccaatgcacaattaaacggtattgaaaacgttagcttttacgctggtgatatgaaa
gctgtttttaacgaaggctttatccagcgcaatggcaaaccagatgttattattaccgac
ccaccaagggatggcatgcataaagatgtagtacaacaaattttgaacatcgcccctaaa
aaggtggtttacgtaagttgtaacagcgctacacaggcaagggatttattattaatggac
gccatgtacaaagttaccaaggtacaacccgtggatatgttcccgcagacgcatcatgtg
gaaaatgttgtacttttagaaaaaagataa
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