Gossypium arboreum (tree cotton): 108455767
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Entry
108455767 CDS
T05776
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108455767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gab04121
]
108455767
Enzymes [BR:
gab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
108455767
Ubiquitin system [BR:
gab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108455767
Multi subunit Ring-finger type E3
ERAD complex
108455767
LMBR1L-GP78-UBAC2 complex
108455767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_2
CUE
zf-C3HC4_3
zf-ANAPC11
zf-C3HC4_4
zf-RING_11
zf-RING_16
zf-RING_5
E3_UbLigase_EDD
Endonuclease_7
PHD
zf-HC5HC2H
RINGv
Motif
Other DBs
NCBI-GeneID:
108455767
NCBI-ProteinID:
XP_017609804
LinkDB
All DBs
Position
1:complement(66554860..66562470)
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AA seq
569 aa
AA seq
DB search
MGVNYLVISVFSTALSFIALQLRTEFSLLQTDGLITENFIHTENVNHVPELLLGSYSIMA
LLANFVLNVFILVILTLKTVFFGQLYSSEIRKLIECIINYVIYKGTFLPLVIPPTIIQAG
LWLIWLTVICCLKMFQALGRDRLEHLNASPSVTPWAYFRVFSVFLFVLSFSFFWIGLSFV
LFKTLNPSMFLLLFFEPLSITFETLQAILVHGFQLLEISFHAVGNTVDCERSKLFDLSVA
GSFWEWKGILIRNLGFFLDLATLIMAVGHYVLIWWLHGMAFHLADAVLFLNIRALLTAIV
KRINGFIKLRMALGALHAALPDATSAEIQAYDDECAICRESMAKAKKLHCNHLFHLSCLR
SWLDQGLNEAYSCPTCRKPLFLGRTENEVNSRQINSGLDRQNMPGHTLATGVFPNQMQNP
VEGSPWRSAELDSGWLHSWPTQSVDGAGPSTGVGSVGLGRVHMMMRHLASVGDTAVEHTA
RSPWSMNLSQAAASVSSVPPNVGGRYPGNAGSLRMRTTPSTGNGNIANILAMTETVREVL
PHIPDEMIIQDLQRTNSVTDTVNNLLLQM
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgaactacttggtgatctcagtgttctctacagctttaagctttatagctctt
caacttcggacagaattttcactacttcaaactgatgggttaattactgagaattttatt
catacggaaaatgtcaaccatgtacctgagcttcttttgggttcttactccatcatggct
ctgctggcaaattttgtgctcaatgtatttattctagtcatccttactctaaagactgta
ttctttggtcagttatactcttcagaaattcggaaattaatagaatgcattatcaactat
gttatctacaaggggacctttttaccattagttattccaccaacaataatccaagcaggt
ctttggttaatctggttgactgttatatgttgtctaaagatgtttcaagctttgggcagg
gatagacttgagcatttgaatgcatctccttctgttacaccgtgggcatacttccgtgtc
ttttcagtgtttctctttgtcctatctttcagtttcttctggatagggctgagctttgtg
ctattcaaaacactgaatccgtctatgtttctgctgttgttttttgagcctctcagtatt
acttttgagaccttgcaggcaattttggttcatgggtttcagctgcttgaaatatcattc
catgcagtgggcaacactgtagattgcgaaagatcaaaactatttgatttatcagttgca
ggttcgttttgggaatggaagggcattcttattcgcaatctaggtttcttccttgacttg
gcaacactgataatggcagttggccattatgtgcttatttggtggcttcatggcatggca
ttccatctagcagatgcagttcttttcttgaatatacgcgcattgctaactgcaattgtg
aaacgaataaatggatttatcaaattgagaatggcattaggtgctcttcatgcggcactt
cctgatgcaacatctgcagagatacaggcatatgatgatgaatgtgccatatgtcgggaa
tctatggccaaggctaaaaagcttcattgtaatcacctttttcatctttcttgcttgaga
tcttggttggaccaaggcttaaatgaagcttactcatgtccaacatgtagaaagccactt
ttcctgggcagaactgaaaatgaggtgaattcccgtcaaataaattctggacttgatcgg
caaaatatgcctggtcacactttagctaccggagtattcccaaatcaaatgcagaaccca
gtggagggcagcccttggaggagtgcagaactggattcaggatggctgcattcttggcca
acccagagtgttgatggagcaggtccttctaccggtgttggatctgttggacttgggaga
gttcatatgatgatgaggcatcttgcatctgtcggagatactgctgttgaacatactgct
cggagcccctggtccatgaatctgtctcaggccgctgcatctgtttcatcagttccacca
aatgtcggcggaagataccctggaaatgctggcagtttacgtatgaggactaccccaagt
acaggaaatggcaacatagcaaacatacttgccatgactgagactgtacgagaggttttg
ccacatatcccggatgagatgattattcaggacttgcagagaacaaattctgttactgac
acagtgaataatcttcttctccaaatgtga
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