Gambusia affinis (western mosquitofish): 122839088
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Entry
122839088 CDS
T07758
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03320
PPAR signaling pathway
gaf04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
122839088 (rxrgb)
03320 PPAR signaling pathway
122839088 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122839088 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gaf03310
]
122839088 (rxrgb)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
122839088 (rxrgb)
Nuclear receptors [BR:
gaf03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
122839088 (rxrgb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
122839088
NCBI-ProteinID:
XP_043986318
LinkDB
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Position
LG10:12363044..12392397
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AA seq
482 aa
AA seq
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MDSNDPYLHLSMWHPASLPATGGSPTRERGCCHYSAGPMSAGHAHPPSMAGMVGHPSVIS
TSRPLPSPMSTLGSPMNGLASPYPVITSSLGSPSVPLQSTPNMNFGPISSPQMNSMNSVS
SSEDIKPPPGLQSLGNINYQCTSPGGMSKHICAICGDRSSGKHYGVYSCEGCKGFFKRTV
RKDLTYTCRDNKECLIDKRQRNRCQYCRYQKCLAMGMKREGVGVCAAVQEERQRGKERGE
NEVESTSSFNDDMPVEKILDAELAVEPKTEMYSDGSPGNSTNDPVTNICQAADKQLFTLV
EWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSA
GVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASL
ESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ
IT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggacagcaatgatccatatttacacctcagcatgtggcaccctgcctctttacctgca
accggaggcagccctacgagggaaaggggttgctgtcactactcggcagggccaatgagt
gcaggccacgcgcatcctccttccatggctggcatggtgggacatccctcagtcatcagc
acctccaggcccctaccgtcccccatgtccaccctgggctcgccaatgaacggcctggca
tcgccttatcccgtcatcacgtcgtctctgggatcaccctccgtacccctccagtctact
cccaacatgaactttggaccaatcagcagtccacagatgaactcaatgaacagtgttagc
agttcggaggacatcaagcctccaccgggcctgcagtctctgggaaacatcaactaccaa
tgtacgagtccgggggggatgtcaaagcacatctgtgctatctgcggggatcgctcttca
ggaaagcactatggtgtgtacagctgcgaaggctgcaaaggcttctttaagcgcactgtc
cgtaaagatctcacctacacgtgtcgagacaacaaagagtgcctgatagacaagcgccag
cggaaccgctgccagtactgccgctatcagaagtgcctggccatgggcatgaagagagaa
ggtgtgggtgtgtgtgcagccgtgcaggaagagaggcagcgcgggaaggagcgcggcgag
aacgaggtggaatccaccagcagtttcaacgacgacatgccggtggaaaagatcctggat
gctgagctggctgtggagcccaaaacggagatgtacagcgatggcagccccggaaactcg
accaacgaccccgtcaccaatatctgtcaggcagcagacaagcagctcttcaccttggtg
gagtgggccaaaaggatcccacacttctctgagctccctctggacgaccaggtcatcctg
cttcgagcaggctggaatgagctgctcattgcctctttctcgcatcgctcagtcactgtt
aaagacggcatccttttggctacaggtctacacgtgcacagaagtagcgcccacagtgca
ggagtgggatccatcttcgacagagtcctcacagagttggtatccaaaatgaaagacatg
cagatggataagacagagctgggctgcctgcgagccatcgttctattcaacccagatgca
aaaggtttgtcaaacccatcagaggtggaggcgctaagagaaaaagtctacgcttcactg
gagtcgtatacaaaacagaagtaccccgaccagcctggcaggtttgccaaactgctcctg
cgcctgccagctctgcgctccatcggtctcaagtgtttggagcatctgttcttctttaaa
ctaatcggggacacgcccattgacactttcctgatggagatgctggaggctccgcatcag
atcacatga
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