Glaciecola sp. 4H-3-7+YE-5: Glaag_3703
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Entry
Glaag_3703 CDS
T01483
Definition
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03410
Base excision repair
gag03430
Mismatch repair
gag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Glaag_3703
03430 Mismatch repair
Glaag_3703
03440 Homologous recombination
Glaag_3703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gag03400
]
Glaag_3703
Enzymes [BR:
gag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.- Acting on ester bonds
3.1.-.-
Glaag_3703
DNA repair and recombination proteins [BR:
gag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Glaag_3703
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Glaag_3703
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Glaag_3703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
2-ph_phosp
Motif
Other DBs
NCBI-ProteinID:
AEE24632
LinkDB
All DBs
Position
complement(4365707..4367425)
Genome map
AA seq
572 aa
AA seq
DB search
MQIRRRSPVSIEHLPDSINPTLKQIYATRGITSEQQLERSAKALLHYKDMSGVGDAVRIL
ADALAQSKRIIIVGDFDADGATSTALSMLALGMMGCKNHDYLVPNRFNFGYGLSPQIVDV
AHEQGAQVIMTVDNGIACFAGVERAKELGITVLITDHHLAAESLPIADAIVNPNQPNCSF
MSKNLAGVGVAFYLMLALRAHLRGVDWFAQNDIDVPNLADLLDIVALGTVADVVPLDENN
RILVHQGLLRIRSDKCRPGIQALIEVAGRDKRKMVASDLGFVIGPRLNAAGRLDDMSMGI
ECLLTDSDYKAKQIAVELDSLNRERREIEQSMQQEAVTALDSLQLSEQDMPHGLVLYQAD
FHQGVIGILAGRIKEKYFRPTIAFAHQDDEIIKGSARSIPGVHIRDLLEELSTRYPGLII
KFGGHAMAAGLSIEMAKLEEFKKRFTQLAQEHLAGKPLAGELISDGELPAQALTLEFSQL
LKDAGPWGQGFPEPLFDGQFELVEQRIVGHKHLKMMLRMPTGKLVDAIAFNVDTQVWPNE
QCKHVELAYKLDINEFRGRTSLQFLVEGLNPL
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaatacgccgccgttcccccgtttctattgagcatttacccgactcaatcaatccg
accttaaagcaaatttacgccacccgcggtatcacctctgaacaacagttagagcgaagt
gctaaagcgcttttgcactacaaagacatgtcaggtgtgggcgatgccgtgaggatattg
gccgatgcgttagcgcagagtaaaaggattattattgtaggagacttcgacgccgatggc
gcgacaagtacggcgttaagtatgctcgcactagggatgatgggctgtaaaaaccatgac
tacttggtaccaaatcgctttaactttggttacggccttagcccacaaattgttgatgtt
gcccatgagcaaggtgctcaggtgataatgaccgtagataatggcattgcctgctttgct
ggtgttgagcgagcaaaagagttagggataacagtgctgattacagatcaccatttggcc
gcagaatccttgcccatcgccgatgcgatcgtaaacccaaatcaaccaaactgttcattc
atgtcaaagaatttggcaggggtaggcgtagcgttttatttaatgctcgcactcagagca
cacttgcgcggtgtcgattggttcgcccagaatgatattgatgttccaaatttagctgac
ctgctcgatattgtcgccttagggaccgtagctgacgtggtgcccctagatgaaaacaac
cgtattttagtccatcaaggattactgcgtattcgcagcgataaatgtcgcccaggtatt
caagcgttaattgaagtcgctgggcgcgataaacgtaaaatggtcgcttctgatttaggc
tttgtgattggcccaaggttaaacgccgctgggcggttagacgatatgtctatgggtatt
gagtgcttactaacagactcagattacaaagcaaaacaaattgcggttgaattagacagc
ctaaatcgtgaacgccgcgaaatcgagcaatccatgcagcaagaggcggttactgctctt
gatagtttgcagctgtcagagcaagacatgccccatggcttggttttgtatcaagctgat
ttccatcaaggcgtgataggtatattagctggacgaattaaagaaaagtattttagaccg
acaattgcctttgcccatcaagacgatgagattatcaaaggatcagctcgctcaataccc
ggtgtacatattcgtgatttgttggaagagctcagtacgcgatacccaggccttatcatt
aaatttggtggccatgcgatggcggcgggtttaagcattgaaatggccaagctagaagaa
ttcaaaaagcgttttacccagcttgcacaagagcatttagcgggcaaacccctcgcaggt
gagcttatttcagacggtgagttacccgcacaggcgttaacgttagagttcagccagtta
ctcaaagatgcggggccttgggggcaaggctttccagagcctctttttgatggtcaattc
gaattggtcgaacaacggatcgtaggccacaaacacctaaaaatgatgctgcgcatgccg
accggaaagctagtcgatgctatcgcattcaatgttgatacacaggtgtggccaaatgag
cagtgcaagcatgttgaattagcttacaaactagatataaatgaatttcgtggccgcaca
tcgttgcagtttttggttgagggattaaatccgctgtga
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