Glycocaulis alkaliphilus: X907_1938
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Entry
X907_1938 CDS
T05786
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gak
Glycocaulis alkaliphilus
Pathway
gak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X907_1938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gak03019
]
X907_1938
03009 Ribosome biogenesis [BR:
gak03009
]
X907_1938
Enzymes [BR:
gak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
X907_1938
Messenger RNA biogenesis [BR:
gak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X907_1938
Ribosome biogenesis [BR:
gak03009
]
Prokaryotic type
rRNA processing factors
X907_1938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Pput2613-deam
Motif
Other DBs
NCBI-ProteinID:
AZU04461
UniProt:
A0A3T0EAN9
LinkDB
All DBs
Position
2011699..2014386
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AA seq
895 aa
AA seq
DB search
MAGRFVLARAPEHAFMSRKMLIDASHPEETRVVIVDSNRVEDFDFESASRSPIRGNIYLA
QVTRVEPSLQAAFVEYGGNKHGFLAFNEIHPDYYQIPFEDRQALREAEAELTADTESDGG
DDADDDEDLMEEIARKRRNLLRKYKIQEVIKRRQVMLVQVSKEERGNKGAALTTYLSLAG
RYCVLMPNTDRGGGISRKITSATDRKRLKSAVQGLDLPRGMGLIIRTAGAARTKLEIKRD
YDYLIRLWETIRETTLKSVAPSLIYEEGNLVKRAIRDLYDKDIEHVLVEGEEAYKEAKGF
MRMLMPSHATKVQPYTDDMPLFLRHGTESQLEAIYSPVAQLKSGGYLVINPTEALVAVDV
NSGKSTKERNIEQTALRTNLEAAEEAARQMRLRDLAGLIIIDFIDMEDSKNVRAVEKKMK
EALSKDRARIQTSKISQFGLMEISRQRRRTSLVEGSTEPCPHCNGIGYLRSVESSALAAV
RSVEEEGLKGRASKIALHLPNEVALYLLNEKREYLRAVEQRFDMRVIIATDIDLKRDGSR
IERLETRKDGDRGPYIPKPLTVESAVLTPEDEADLRAAREEASLEEEEAAEVSGERPHEE
GQGEERRGRKRRRRGGRNRGDGDNRPDAAGQEGGEADAAEGESTEAQNDGGQPAPARADA
GDDEAGRKRRRRGRRGGRGRRRRGDGEASGDQAAASTQDSGSNAGGDADIPGLSVIEPGE
SEAIGSGETPPSRTRPSRRRKQAVAETAPATESAVEAADAPAASGEPDPAEEAPKPKRTR
RKKADPAPAEESAAETPAAGEAAEKPKRTRKAPARKAAKAEESAVEDTAEPAAKAPEDKP
ARPARKPRAKKAESAPEAPAAGDAAPAEESQTGDSTGPKRSGWWQRSGKLFGLGS
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggccgggcgattcgtgctggcgcgcgcaccggagcacgcctttatgtcccgcaaaatg
ctgatcgatgcctcccacccggaagaaacccgggtggtcattgtggattcaaaccgcgtt
gaggatttcgactttgagtcggcctcccgcagccctatccgtggaaatatctatctcgcc
caggtcacccgcgtagaaccctcgcttcaggccgctttcgttgaatatggcggtaacaag
cacggcttcctggccttcaacgagattcatcccgactattaccagatcccgttcgaggac
cgtcaggccctgcgcgaggccgaagccgagctgaccgccgataccgaaagcgatggcggc
gacgatgccgatgatgacgaggatctgatggaggagattgcccgcaagcggcgcaatctg
cttcgcaaatacaagatccaggaagtcatcaagcgccgccaggtcatgctggtgcaggtc
tccaaggaggagcgcggcaataaaggcgcggcgctgaccacctatctgtcgcttgccgga
cgctattgcgtgctgatgcccaacacggaccgcgggggcggcatctcgcgcaagatcacc
agcgcgacggaccgcaaacgcctgaaaagcgccgttcagggcctcgatctgccgcgcggc
atggggctcatcatccgcacagcgggtgcggcccgcaccaagctcgagatcaagcgcgat
tacgactatctgatccggctgtgggaaacgatccgcgagaccacgctgaaatccgtggct
ccgtcgctgatttacgaggaaggaaacctcgtcaagcgcgcgatccgcgacctctatgac
aaggacatcgagcacgttctggtcgagggcgaggaagcctacaaggaagccaagggcttc
atgcgcatgctgatgcccagccacgccacgaaggtacagccctatactgacgacatgccg
cttttcctgcgccacggcacggaaagccagcttgaggcgatttactcgccggtcgcgcag
ctcaagtccggtggctatctggtcatcaacccgaccgaggcgctcgtcgccgttgacgtg
aactcgggcaagtcgaccaaagagcgcaatatcgaacagacggcgctgcgcaccaatctg
gaggcagccgaggaagcagcccgtcagatgcgcctgcgcgatctggccggcctgatcatc
atcgacttcatcgacatggaggactccaagaacgtccgcgccgtcgaaaagaagatgaaa
gaggcgctctccaaagaccgggcgcgcatccagacctcgaaaatttcccagttcggcctg
atggaaatttcccgtcagcgccgccgcaccagccttgtggaaggctccacagagccctgc
ccgcactgcaacgggatcggctatctgcgcagtgtggaatccagcgcgctggcggctgtt
cgcagcgtcgaggaagaaggactgaaagggcgcgcatcgaagatcgcgctgcacttgccc
aatgaggtggccctctacctgctgaacgagaaacgcgaatacctgcgcgccgtcgagcag
cgcttcgacatgcgcgtcatcatcgcgacagacattgatctgaaacgcgacggatcgcgc
atcgagcgcctcgaaacccgcaaggacggtgatcgcgggccctatattcccaagccgctg
accgttgaatccgccgtgctgacccccgaggacgaggccgatctgcgcgccgccagggag
gaagcctcactcgaagaggaagaggccgccgaggtctccggcgaacgcccgcacgaagag
ggccagggcgaagaacgccgtggccgcaagcgccggcgccggggcggacgcaaccggggc
gatggcgacaaccgtcctgatgcagccggacaggagggcggcgaagcagacgccgccgaa
ggcgaaagcaccgaggcgcaaaatgatggcggccagccggcaccagcacgcgcggatgcc
ggcgatgatgaagctggccgcaagcgccgccgccgtggccgcaggggtggccgtggccgc
cgccggcgcggtgatggcgaagcatccggcgatcaggctgcagcctccacacaggattca
ggcagcaatgccggcggcgacgccgacattccgggcctgtctgtaatcgagccgggtgaa
agtgaagccattggttctggcgagacgccgccttcgcgcacccgcccctctcgccgccga
aagcaggctgtggcggagaccgcaccggcgactgaaagcgctgttgaggcggctgacgcg
cctgccgcgtccggcgaacctgaccctgccgaggaggcgcccaagcccaagcgcacacgg
cgcaagaaggccgatcctgcgcctgcagaagagtctgcagccgaaacaccggccgccggt
gaagccgctgaaaagcccaagcgcacccgcaaggcacctgcgcgaaaggcggccaaggct
gaagagagtgccgtagaggacacggccgagccggcagcgaaggcaccggaagacaaaccg
gccagaccggcccgcaaaccgcgcgccaagaaggctgaatccgcgccggaggcaccggcc
gccggggacgcggcgcctgccgaagagtcacagaccggcgacagcaccgggccaaagcgg
tctggctggtggcagcgctccggcaagctgttcggactgggttcctga
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