Gasterosteus aculeatus (three-spined stickleback): 120820484
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Entry
120820484 CDS
T07457
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120820484 (col13a1)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120820484 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120820484
NCBI-ProteinID:
XP_040034190
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Position
VI:2379130..2482009
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AA seq
758 aa
AA seq
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MNEHQKWEMAGKPSEEKRIRVEQQRPSKQLWKKWSHLPSVMICVAACVLCIGVCIVVLLR
TSELQTRLVSLEQRQRDAQLSAWMLSLEQAEPVILGRLDQILDEKLAARIPKTRESREAP
HSCLCPPGPPGPPGRAGFPGDKGNIGIPGRMGLKGQAGEKGATGEPGLSIIGPRGPPGQP
GTRGFPGFPGPIGLDGKSGQNGLKGDMGDPGPKGEKGVCGDYTHRGLFVQDLPLKTLAAL
RSSQALMLKMLPITVRNMPSISPLILKRLKQGEQGPPGPPGPPGLPGTPGINGASGPVGK
PGEPGKPGKDPRLLPGLKGEQGVPGQKGDQGDVGPLGPQGPKGVKGDQGLKGHEGKRGFP
GEKGQVGLPGTPGIPGKRGYRGERGQPSIAGQGIKGEPGSPGRPGLIGIKGDTGDKGEKG
DAGLEGPAGPRGPLGPAGEPGKTDIQNNDNDIRNIPLMGPPGLPGPSGAPGLPGTKGEVG
VPGPPGLDGEKGPRGKPGEPGPAGPAGPEGPRGMGGVIGFSGPKGDKGDMGSSGSPGLDG
PTGEKGATGAPGPTGLPGSMGHKGEPGEGGRSQMIYGPPGPPGSPGPVGPAGEPGLGMRG
EKGASGQKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPSGVSGPAGPKGERGETGNAGLPG
PNGPQGIPGLVGPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGFRGFKGEKGE
PGLPGLDGLDAPCPVGDDGLPVPGCWNKGQHPFQLAKK
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagcatcagaagtgggaaatggccggtaaaccgagtgaggagaagcggattcgc
gtcgagcaacagcgaccttcaaaacagctgtggaaaaaatggagccatttgccaagcgta
atgatttgcgttgcagcatgtgttctgtgcatcggagtttgcattgtggttttgctgcgg
acctcggagctgcagaccaggctagtgagtctggagcaacggcaaagagacgcgcagctc
tcagcatggatgttgtctctggaacaggcggagcccgttatcctgggccgactggaccag
atcctggacgagaagcttgcagcgagaataccaaagacaagggagtcgagggaagctccc
cacagctgcttgtgtcctccaggacctccaggtcctcctggacgtgcaggctttccgggg
gacaaaggaaacatagggattcctgggagaatgggcttaaaaggacaagcaggggagaag
ggcgcaacaggcgagccaggtctgtctatcattggtccaagaggacctccggggcaacct
gggacaagaggatttccaggctttccaggtccaattgggttggatggcaagtctggacag
aatggactgaagggagacatgggggatcctggacccaaaggggagaagggcgtatgtgga
gactacacacaccggggtctctttgtgcaggatctccctctgaaaaccctggctgccttg
cgctccagtcaggctctgatgttgaagatgttgcccatcaccgtacgcaacatgccctca
ataagccctctaatcctaaaacgcctcaagcagggtgagcagggacccccgggacctcca
ggaccgccaggactcccagggaccccgggcattaatggagctagtggcccagtgggtaag
cctggtgaaccaggcaaaccaggaaaagacccacggcttctaccgggactgaagggggag
caaggtgtgccgggacaaaagggggatcaaggtgatgttggcccactaggtcctcagggc
ccaaagggagttaagggggaccaaggacttaagggacatgaaggaaaaagggggtttccg
ggagagaagggccaggttggtctcccaggtacccctggcatcccaggcaagagaggctac
aggggtgagaggggacaaccgagcattgcaggccagggaattaaaggagaaccaggctca
ccaggacggccaggcctgattggaatcaagggtgacactggagataaaggagagaagggg
gatgccggccttgaaggcccagcgggaccaagaggtccactaggcccagctggtgagcca
ggaaagactgacatccaaaacaatgacaatgatattcgcaacatacccctgatgggccct
cctggattacctggaccttcaggggcccctgggctccctgggacaaagggtgaagttggt
gtgccaggtcctccaggactggatggagagaaggggccaaggggaaagcctggagagccc
ggtcctgcaggcccagctggtcccgaaggtcccagaggcatgggtggtgtcataggcttc
tcggggccaaaaggagacaagggagacatgggttcatctggatcacctggtttagatggc
cccacgggtgaaaagggggctacaggggcccctggccctactggattacctggctcaatg
ggtcataaaggcgaacctggcgaaggaggaaggtcacaaatgatctatggacctccaggg
cctccaggaagtccaggaccagttggcccagcaggagaaccaggattaggcatgagagga
gaaaagggagcgtcgggtcagaagggtgacaagggcgacagaggccatcttggacttcct
ggggctcatgggttagacggcagaccgggtccagtgggtctaataggaccatcaggtgtg
tcagggccagcaggaccaaagggggagagaggtgaaacagggaatgctggattgccagga
ccaaatgggcctcaaggcatccctggtttagttggaccacaaggactgaaaggcaaccgg
ggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagca
cctggattagatgccccctgtccgttgggtttccgaggctttaaaggggagaaaggtgaa
ccgggcttgccaggcctggacgggctggatgccccttgtcctgtgggagatgatggctta
cctgtaccaggatgttggaataaaggtcaacatccttttcaactggcaaagaagtag
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