Citrifermentans bremense: GEOBRER4_03260
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Entry
GEOBRER4_03260 CDS
T07006
Name
(GenBank) hypothetical protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GEOBRER4_03260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gbn03400
]
GEOBRER4_03260
Enzymes [BR:
gbn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GEOBRER4_03260
DNA repair and recombination proteins [BR:
gbn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GEOBRER4_03260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_11
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
BCG45576
UniProt:
A0A6S6M064
LinkDB
All DBs
Position
complement(397672..401061)
Genome browser
AA seq
1129 aa
AA seq
DB search
MKRFDLIHTPLAGRNLIEASAGTGKTFTIAGVYLRLVLEEKLDVSRILVVTFTEAATKEL
KERIRNKLKEAEDGFLTGAADDFLIQGLIESRPDHSEARRLLSSAIRSFDEAAIFTIHGF
CQRMLQDNPFESGSLCDTELVTDQGKILMEIAQDYWRINCYGQPAERVAAADAAKVTPES
LLKLVQRVSGDPNATVIPDPPADATEIEDWLQGLKRGFFDYLRAELPRRKRLKNLRSFDD
LLLDLHAALLRPVSSLPRLIRERYQAALIDEFQDTDPLQFAIFDAIYPVGHEAPFFLIGD
PKQAIYSFRGADIFAYMGAAEATEERHTLLQNFRSEAGLIDAVNTLFASRELPFLYPQIG
FNPVEAAPKEKSRLVEEGQRKAPLKLWLAPRKDAGKPINKGDAWDDLPEAVAAEISRLLR
DGAAGKLTIEELDKDPDGGDKWVQRPVQPKDVAVLVRANRQAKLMQRALTRRGIPSVLCS
AGNLFESDEAAELLRLLSAVAQPGHESLLRGALATDLVGVSGTELAELMNDEKGWEEILE
EFRDYHDTWSSGSCMSMALQFMEKREVRKRLLAEPMGERRLTNLLHAIETIHQAQVEERL
GMEAVIAWLACRITEEPKKEEYEIRLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAEYAG
KDEGALFHDEDGRVVLDMGSEQMAEHKAQAAREALAESLRLLYVALTRGKHRTYLVWGAF
KDAGESALHYLLHPGESPVKGQVTLSDAGIRERLETLAASSPGKIEVLDLPAADLSPYRA
HDKKKPDLAPLPFNGAIPRDWRVASFTSLSSRKQHTAELPDRDEGSPVEERAAHEVEPTG
IFAFPKGAKAGIFLHKIFEDLDFTRAKEQLLPLVEEQLDKHGFSAEWSGAVGQMVHNVLQ
APLGDWEIKLAQVGLERRLTEMEFFFPLSLVTSERLKDAASRFMAGTGAAQGLRLPVELA
DLFGRLSFAPVQGMLLGFIDLVFEHGGRYYIVDWKSNHLGNTPGSYGQEALKKEMAENFY
PLQYLLYTVALDNYLRLRIPDYDYDRHFGGVFYLFLRGVDGTGNGVYADRPPKELIAHLA
EVLLPESARPSGKGEPSPSPQPSPAGRGGVGKKSKKAEIEGQLSLDLFD
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggttcgacctcatccataccccgcttgccgggcgcaacctgatcgaggcgagc
gccggcaccggcaagaccttcaccatcgccggggtctacctgcgcctggtgctcgaagag
aaactcgacgtctcgcgcatcctggtggtcaccttcaccgaggccgcgaccaaagagctc
aaggagcggatcaggaacaagttgaaggaggcggaggacggcttcctcaccggtgctgcc
gacgacttcctgatccaggggctgatcgagtcgaggccggaccactccgaggcgcgtcgg
cttctctccagcgcgatacggagcttcgacgaggcggccatcttcaccatccacggcttt
tgccagaggatgctgcaggacaaccccttcgagagcggctccttgtgcgacaccgagctt
gtgaccgaccaggggaagatcctgatggagatcgcgcaggactactggcgcatcaactgc
tacggccagccggcggaaagggtcgccgcggccgacgccgccaaggtaacccccgaatcg
ctgctgaagcttgtgcagagggtcagcggcgaccccaacgccaccgtgatccccgacccg
cccgccgacgccaccgagattgaagactggctccaggggctcaagcgcggtttcttcgac
tacctgcgcgccgagcttccgaggcgaaagcggctcaagaacctgcgctccttcgacgac
ctcctcctcgacctgcacgcggcgctccttcgcccggtttcgtctctgccgcggctgatc
cgcgagcgctaccaggcggcgctcatcgacgaattccaggacaccgacccgctacagttc
gccatcttcgacgccatctacccggtgggacacgaggcccccttcttcctcatcggcgac
cccaagcaggcgatctacagcttccgcggcgccgacatcttcgcctacatgggggcagcc
gaggcaaccgaagagcgccacaccctgctgcagaacttccgttccgaggcggggttgatc
gacgccgtcaacaccctcttcgcgtcgcgcgagctccccttcctctacccgcagataggc
ttcaacccggtggaggctgccccgaaggagaagagcaggctcgtcgaggaagggcagagg
aaggcgccgctgaagctctggctcgccccgcgcaaggacgccggtaagccgatcaacaag
ggagacgcctgggacgacctgcctgaagcggtggcggcggaaatctcgcggcttctgcgt
gacggcgcggccgggaagctgaccatcgaggagctcgacaaggacccggatgggggcgac
aagtgggtgcagcgcccggtccaacccaaggacgtcgcagtcctggtgcgggcgaaccgg
caggcgaagctgatgcagcgggcgctcacccgcagggggatcccgagtgttctttgcagc
gcggggaacctcttcgagtcggacgaggcggcggaactgctgcggctcctttccgcggtg
gcgcaaccgggacatgagtcgcttctgcgcggggcccttgccaccgacctcgtgggggtg
agcgggacggaactggcagagctcatgaacgacgagaaggggtgggaggaaatcctggag
gagttccgggactaccacgacacctggagcagcggcagctgcatgtccatggccctgcag
ttcatggaaaagcgcgaggtcaggaagcggcttctcgctgaaccgatgggagagcggcgg
ctcaccaacctcctgcacgccatcgagaccatccaccaggcgcaggtcgaggaacgcctg
gggatggaggcggtcatcgcctggctcgcctgccgcatcaccgaagagcccaagaaggaa
gagtacgagatccgcctggagaccgacgaggccgcggtgcagctggtcaccatccacaag
agcaaggggctcgaataccccatcgtgttcctccctttctgctgggccgagtacgccgga
aaagacgagggggcgctcttccacgacgaggatgggcgggtggtcttggacatgggttca
gagcagatggcagagcacaaggcgcaggccgcgcgggaggcgcttgccgagagcctgcgg
cttctctacgtcgccttgacgcgaggcaagcaccggacctacctcgtctggggcgccttc
aaggacgcaggggagagcgcgctccactacctgcttcatccgggtgagagcccggtcaag
ggacaggtgacgctcagcgatgcaggcatccgtgaacggctggaaacgctggcggcatcc
tcgcccgggaagatcgaagtcctggacctccctgcggccgacctgtccccgtaccgggcg
cacgacaagaagaagccggatctggcgccgcttccttttaacggggccatcccccgtgac
tggcgcgtggcgagcttcacctcgctctccagtcgcaagcagcacacagccgagcttccc
gaccgtgacgaggggagtccggtagaggagcgcgctgcgcacgaggtcgagccgaccggg
atcttcgcctttcccaagggggccaaggccggcatcttcctgcacaagatcttcgaggac
ctcgatttcacaagggccaaagagcagctcttacccctggtcgaggagcagctggacaaa
catggcttttccgctgaatggagcggtgccgttggccagatggtgcataacgtcctgcag
gcgccgctgggggattgggagatcaagctggcgcaggtggggctggagcggcgcctcacc
gagatggaattcttcttccccctttcgctcgttacctccgagcgcctgaaggatgccgcc
tcccgcttcatggcgggaactggcgcagcgcaaggtctccggctcccggtcgagctggcg
gatctcttcggccgcctctctttcgcgccggtgcaggggatgctccttggattcatcgac
ctcgtcttcgagcacggcgggcgctactacatcgtggactggaagtccaaccacctgggg
aacacccccggcagctatggccaggaggcgttgaaaaaggagatggcagagaacttctat
cccctgcagtacctcctttacacggtggcgctcgacaactacctgaggctgaggatcccg
gattacgattacgaccggcacttcggcggcgtcttctacctcttcctgcgcggcgtcgac
ggcacggggaacggggtctacgcagaccgccctccgaaagagctcatcgcccaccttgcc
gaggtgctgctaccggagagcgcccgcccgtccggtaaaggtgaaccaagcccctcaccc
cagccctctcccgctgggcgagggggagtcgggaagaagtcgaaaaaagctgagatcgaa
ggtcagctcagcctcgatctgttcgattaa
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