Granulibacter bethesdensis CGDNIH4: GbCGDNIH4_0375
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Entry
GbCGDNIH4_0375 CDS
T03156
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gbs
Granulibacter bethesdensis CGDNIH4
Brite
KEGG Orthology (KO) [BR:
gbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gbs03016
]
GbCGDNIH4_0375
Enzymes [BR:
gbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
GbCGDNIH4_0375
Transfer RNA biogenesis [BR:
gbs03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
GbCGDNIH4_0375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AHJ64767
LinkDB
All DBs
Position
complement(431232..431870)
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AA seq
212 aa
AA seq
DB search
MTMADVTGHPPALLWSCQPDCLAHAAPATPSPGRAPMRLFVGLDLPWILKDELYGIAYGL
PGARWISPENYHLTLRFIGDVPGHRADELDLALSTLRARGFSLVLTGIGIFERAGRSTLY
VGVEKNPQLDHLQNKIETGLQRVGLPPERRRFMPHVTLARLDGTAENRLASYVQSHNLFR
TDPIPVEHFTLFSSQLGKEQSVYTVEADYALA
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
ttgaccatggctgatgtgaccgggcaccctcctgcgttgctctggtcctgccagccggat
tgcctcgcgcatgctgcccccgccaccccttcccccgggagagcacccatgagactgttt
gtcgggctcgatcttccctggattctgaaagatgaactctacgggattgcctacggtctg
ccgggggcacgctggatttcaccggaaaattaccatctgaccctgcgcttcatcggcgac
gtaccgggccatcgcgccgatgagcttgatctggccctgtccaccttgcgggcacgtggt
ttctctctggtgctgacagggatcggtattttcgagcgggccggacgctccaccctgtat
gtcggcgtggagaagaacccgcagctggaccatcttcagaacaagatcgaaaccgggtta
cagcgcgtgggcctgcccccagaacgccgccgcttcatgccccatgtcacgctggcacgc
ctggatggcacggcagaaaatcgtctggcttcctatgtccagagccataatctgttccgt
accgaccccatcccggtggagcacttcaccctgttcagctctcaactgggcaaggaacag
tcggtttacaccgtggaagcggattacgctctggcatag
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