Geobacter benzoatilyticus: JZM60_12000
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Entry
JZM60_12000 CDS
T07995
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gbz
Geobacter benzoatilyticus
Brite
KEGG Orthology (KO) [BR:
gbz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbz03019
]
JZM60_12000 (hrpB)
Enzymes [BR:
gbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JZM60_12000 (hrpB)
Messenger RNA biogenesis [BR:
gbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JZM60_12000 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
HA2_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QSV44872
LinkDB
All DBs
Position
2618660..2621185
Genome browser
AA seq
841 aa
AA seq
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MPLPIDDILPQLKSSLQVRNSVVIQAPPGAGKTTRIPLALLDAPWLAGKGIIMLEPRRLA
ATNAARWMAATLGEDVGGTVGYTIRFDRKVSRRTRLEVVTEGVLTRRLQSDSFLDGVGAV
IFDEFHERSIHADLALALCRDVQQGLREDLRIIVMSATLDAAPVAALLDDAPVITSEGRI
FPVDIRYLSEDYSDPLPVAVARSVRLALAETEGDILAFLPGAGEIRRCRQLLEDGGPLPS
STAVTPLYGDLPFADQERAIVPAKHRKVVLATNIAETSLTIEGVRVVIDSGYCRRLRFDP
ASGLERLVTERITAASATQRAGRAGRLGPGVCYRLWTDYANRGLTPANPPEIITSDLTPL
ALDLAAWGVAGPASLAWLTPPPQAAYQEAQRLLVQLDAINYNGAITDTGRRMAELPVHPR
LAHMLMKAAGRGLAPLACDVAAILSERDIVKNILEGGVERSESDMLLRIEMLHAWRSQRR
LPSIDAAACRTVDRSAHHLRKLLKAGSGEAAGAVDGDTVALLLAWAYPDRIAMLRGGEGR
RYLLAGGRGAVLSGRSVVHDEPLVVAYEVERGERGDDLIRRASVLARETLRREFADGIVR
GRSVEWDDREGRVSSREEERFGALILESRPVAATAEEVRNALLEGIVRGPALSVLHWSAA
ARRFRARVYLMARLFPDEGWPDLSGEKLLATLGDWLGPCLDGVRRLSDVAAVDLLPPLQA
LLPWNLLRRLDEGAPTHLAVPSGSRIPLDYGEDGTPVLAVKLQEMFGLADTPTVAWGRVP
VLIHLLSPAGRPLQVTADLRGFWNGAYQEVKKEMRGRYPKHPWPDDPWTAVPTRKTKRHG
E
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgcctctccctattgacgacatcctgcctcagctgaaatcatcccttcaggtccgcaat
tcggtcgtcatccaggccccgccgggtgccggaaagacgacccggatcccccttgcgctt
ctcgacgccccctggcttgcgggaaaggggatcatcatgttggagccgcgccgcctcgcc
gccaccaatgcggcccgctggatggcggccacccttggcgaggatgtgggcggaaccgtc
ggctatacgatccgctttgaccggaaggtgtcgcggcgtacccggctggaggtggtgacc
gagggggtgctgacccgccggctccagtccgattcgtttctggacggggtcggggcggtg
attttcgacgagttccatgagcggagcatccacgccgatttggccctggcgctttgccgc
gatgtgcagcaggggctgcgggaagacttgcggataatcgtcatgtcggcgaccctcgat
gccgcgccggttgcggcgctcctggacgacgctccggtaatcaccagcgaggggagaatt
ttccccgttgacatccgctatctttccgaggattacagcgaccctcttcccgtagccgtt
gcccgctcggtccgattagccctggccgaaaccgagggggatatcctcgcctttttgccc
ggagcgggcgagattcgccgttgccggcagcttctggaggatggggggccgctgccgtca
tctaccgcggtaacacctctctatggggacctcccctttgccgatcaggagcgggccatt
gtccccgccaaacaccggaaggtggtgctcgcgaccaatatcgccgaaacgagcctcacc
atcgaaggggtgcgggtggttatcgacagcggctactgccgccgtcttcgtttcgatccg
gcatcgggtcttgaacggctcgtaacggaacggataacggcagcctcggcgacccagcgg
gccggaagggccggtcggttgggccccggcgtctgctaccgcctctggaccgactatgcc
aacaggggcctcacccccgccaatcctcccgaaatcataacttccgatttgaccccgctg
gccctggatctggccgcctggggggtggccggccccgcatccctcgcctggcttacgccc
cctccccaggctgcctaccaggaggcgcaacggctcctcgtgcagctggatgccattaac
tacaatggagcaatcaccgataccggccgcaggatggcggagctgccggtccatccacgg
ctggcgcatatgctgatgaaggctgccgggcgcgggcttgctccccttgcatgtgacgtt
gctgcaattctctcggaacgcgatattgttaagaacatattggaaggaggcgtggagcgg
agcgagagcgacatgttgctgcggatagaaatgctgcatgcatggcgctctcagaggcgt
cttccctcgattgatgctgctgcctgccgtaccgttgaccgctcggcgcaccacttgcgc
aaactgctcaaagcagggagcggagaagctgccggggccgtagatggcgataccgtggcg
cttctgctggcttgggcctacccggaccggatcgccatgctccgcggcggcgaaggacgg
cgatatctcctcgcgggggggcggggcgccgttctttccggtcggagcgtggtgcatgac
gaaccgctcgtggttgcctacgaggtggagcgtggcgagcgcggggacgatctcatccgc
cgagcgagtgttcttgctcgggaaaccttgagacgagagtttgccgacggcatcgtcagg
gggcgatccgttgagtgggatgaccgtgaggggagggtgtcgagccgggaagaggagcga
ttcggtgccctcatacttgaaagcaggccggtcgccgccaccgccgaagaagtgcggaat
gcacttctggaaggaattgtgcgggggccggcactatctgtgctgcactggtcggccgcc
gcgcgccgtttcagggcacgggtgtatctcatggcccggctttttcccgacgaggggtgg
cccgatctctccggagaaaaacttctcgcgaccctcggcgattggttgggaccctgcctg
gacggagtccggcggctttccgacgtggcggcggtcgatctactgcccccgttgcaggcg
ctcctcccctggaacctcctccgccgcctggacgagggggcgccgacccatctggcggtt
ccgagcggttcgcggatccccctcgactatggggaggacggcacgccggtcctggcggtg
aagctccaggagatgttcggcctggccgatacccccacggtggcatgggggagggtgccg
gtgctcattcatctcctgtcgccggccggccgcccccttcaggtgaccgccgatttgcgg
ggattctggaacggcgcctaccaggaggtgaaaaaggagatgcggggccgctacccgaag
cacccctggcccgatgatccctggacggcggtgccgactcgcaaaacaaaacggcatggg
gagtga
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