Gracilibacillus caseinilyticus: MUN88_15090
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Entry
MUN88_15090 CDS
T09432
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gcs
Gracilibacillus caseinilyticus
Pathway
gcs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MUN88_15090 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gcs03400
]
MUN88_15090 (ligD)
Enzymes [BR:
gcs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MUN88_15090 (ligD)
DNA repair and recombination proteins [BR:
gcs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MUN88_15090 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UOQ47385
LinkDB
All DBs
Position
complement(3197690..3199426)
Genome browser
AA seq
578 aa
AA seq
DB search
MWKPMLPTLTSQVPTGHQWLYQIKYDGFRCGLYWDKKEITIISRNGHDLTASFPEITLWC
KEHRDFYERYFPLQLDGEIVLLLTPYRCDFSQIQRRSKTKRNKKEQHNVTFIVFDLLTCE
ATNLRNKPFTVRDRTLHHLFEENIETIQKAPTFEQLEDVEKLVALHQAEGFVAKKKNAPY
KEGKRSESWLKIKNYRTVQGVVTKWNSNNDYFTVSYYMDNKLQTLGKCKNGLKKEEKDTL
QTFIKQNGKKVNGTTWNVSPSICLDIQCLDASKEELREPHFSAFRFDIEPEHCNTEAIKF
GLAQIPERVSVSKLDKLLFPEYSKLDFLCYLRTMAPYMLPWINDRKLTIIRYPDGVSEPS
FYQKHLPDYAPSFLRPKHSVGGDAAIYCQNFESLLWFGNHGGLEFHIPFNKQQHHQPDQI
VFDLDPPSLKEFYLAVRAALLIKEMMEHQKLKPYIKTSGKTGLQIHIPVNNWTYQQTREL
MEATSNVLIQAYPDQFTSERLIKNRGNRLYIDYVQHAERKTIIAPYSTRATNQATVATPL
FWEEVTETLDPTIFTIRSVLQRIREKGCPFFDFYRHLE
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
gtgtggaaaccgatgttgccaactcttacaagccaagtaccaacaggtcatcaatggtta
tatcaaataaaatatgatggattccgttgtggattatactgggataaaaaagaaatcact
ataataagtcgtaatggtcacgatctgacagctagcttccctgaaattaccctttggtgt
aaggagcatcgtgacttttacgaaagatatttccccctacagttggacggagaaattgtt
ctgttactaactccataccgctgtgacttcagtcaaattcaaagaagatcgaagacaaaa
cgaaacaagaaagaacagcataacgtaacgtttatcgtcttcgatctgctgacgtgcgag
gcgaccaatttacgtaataaaccattcacagtaagggatcgaactctgcatcacttattc
gaggaaaatatcgaaactatccaaaaagcacctacttttgaacagttggaagatgtggaa
aaattggttgctttgcaccaggcagaagggtttgtcgccaagaaaaaaaacgcaccctat
aaagaaggaaagcgcagtgaatcctggttaaagattaaaaactatcgtaccgtccaaggg
gttgtaacaaagtggaatagtaataatgactactttacagttagttattatatggacaat
aagctgcaaacgttagggaaatgtaaaaacggattgaaaaaggaagaaaaagatacgtta
caaacatttattaaacagaatggaaagaaagtaaacggtacaacttggaatgtgtcacca
tcaatctgtttggatattcaatgtcttgacgccagtaaagaagaattacgtgaaccgcat
ttctcagcattccgttttgatatagagccagaacattgcaatactgaagcgatcaaattt
gggttagcacaaattccggaacgagtatcggtgtccaaattggacaaattgctatttcct
gaatactctaaattagattttttgtgttatttaagaacgatggctccatacatgcttcct
tggataaacgatcgaaaattaacgattattcgctatcctgatggtgtaagtgaaccatct
ttctatcaaaaacatttacctgactatgcaccttcctttctcagaccaaagcattcagtc
ggtggtgatgctgctatatattgccagaattttgaaagccttctgtggtttggtaaccat
ggaggcttggagtttcatattccttttaacaaacaacagcatcatcagccggatcagatt
gtctttgatttagatcctcctagccttaaggagttctatcttgctgttcgggcagcatta
ttaatcaaagaaatgatggagcatcaaaaattgaagccatacatcaagacttccggaaaa
actggactacaaattcatatccctgtcaataattggacgtaccagcagacacgtgaatta
atggaagctacaagtaatgtattaatacaagcctatccggatcagtttaccagtgaaaga
ttgataaagaatcgtggaaatcgtctgtatattgattatgtgcagcatgcagagagaaaa
acaatcattgctccttattccacacgtgcaacaaatcaagcaaccgtagctacgccttta
ttttgggaagaagttaccgaaacattggatccaaccattttcactatccgatccgtattg
caaagaatccgagaaaaaggttgccctttctttgatttttataggcatcttgaatag
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