Geomonas oryzisoli: KP004_09070
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Entry
KP004_09070 CDS
T07282
Name
(GenBank) sigma 54-interacting transcriptional regulator
Organism
ger
Geomonas oryzisoli
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_50
PAS_4
HTH_8
PAS_9
AAA_2
Mg_chelatase
PAS
AAA
PAS_8
AAA_5
MCM
AAA_16
DUF790
DUF6296
nSTAND3
HTH_38
HTH_23
YdaS_toxin
Cro
HTH_28
Lzipper-MIP1
Motif
Other DBs
NCBI-ProteinID:
QWV95679
LinkDB
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Position
complement(2045584..2047275)
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AA seq
563 aa
AA seq
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MGDGIISVNTAGTVLLSDRVSRVSLDIYPGSSLREQFPALWSKVVETMRDRRPRFELSVQ
RGETSFLVTVSPVMVDDEVSGAICVFVENTDLEIMTRQLRSFRELTKELAAIIDSSSEGL
WVFDGYGVVLRVNPAAERNNRVKKEVVVGLTARELIEQGYMERSPALEVLGSKGVVNMLV
NEGNRKLIVTGTPVFGDEGGIIRVVVSERDITEIDKLQRELEDQEAIKGQFWHHMLEQQQ
AELASQTIIAKSPRMITALRQAVKVSSADSTVLIHGESGVGKGLFADLIHKNSSRSAKPI
IKLNCGAIPESLIESELFGHERGAFTGAQTAKPGYLELADNGILFLDEIAELPLASQVKL
LRFLEDGRVTRLGGTTGRTVDVRIIAATHRDLEKMVVEKTFRLDLYYRLNVIPLYIPALR
ERQECLLPLIRHYIDYFSQKVGKQKRLARAALDALLAYSYPGNVRELMNLCERLVVMSET
EVIDLQDLPKQLFGSLEEKPLSQSEQTLPVWPGDMTLEQILESVERSLLSDAMKEHGNQY
RIAEALGINQSTVARKLKKYGVS
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacggcatcatctcggtgaacaccgccggaaccgtgctgctgtccgaccgggtc
agtcgcgttagcctcgacatctacccgggcagttccctgagagaacagttccccgcgctg
tggagcaaggtggtggagaccatgcgcgaccgcaggccccgcttcgagttgtcggttcag
aggggggaaacgagcttcctggtcacggtgagcccggtgatggtcgacgacgaggtatcc
ggcgccatctgcgtcttcgtggagaacaccgatctcgagatcatgacccggcagttgcgg
tcgttccgggaactaaccaaggagctggctgccatcatcgactcctcctcggagggactc
tgggtattcgacggctacggtgtggtgctgcgcgtcaatccggccgccgagcgcaacaac
cgggtcaagaaagaggtggtggtcggcctgaccgcgcgcgaactgatcgagcaggggtac
atggaacgctcgcctgcactggaagtactcgggtccaagggcgtggtcaacatgctggtc
aacgaaggaaaccgcaagctcatcgtcaccggcacgccggttttcggcgacgaggggggc
atcatcagggtggtggtctcggagcgggacatcaccgagatcgacaagctgcagcgcgaa
ctggaggaccaggaagccatcaaggggcagttctggcaccacatgctggagcagcagcag
gccgagctcgcctcccagaccatcatcgccaagagcccgcgcatgatcaccgccctgcgc
caggcggtcaaggtgagctccgccgactcgaccgtgctgatccacggtgaatccggcgtc
ggcaaggggctctttgccgacctgatccacaagaattcgagccgcagcgccaagcccatc
atcaagctcaactgcggcgccatcccggagtcgctcatcgaatccgaactgttcgggcac
gaacgcggcgccttcaccggcgcccagaccgccaagcccggctacctcgagctcgccgac
aacggcatcctcttcctggacgagatcgcggaactgccgctggcctcccaggtgaagctt
ttgcgctttctcgaggacgggcgcgtgaccaggctcggcggcaccaccgggcggacggtc
gacgtgcgcatcatcgccgccacacaccgcgacctggaaaagatggtggtggaaaagacc
ttccgcctcgacctctactaccgcctcaacgtgatcccgctctacatccccgcgttgcgc
gaacgccaggaatgcctcttaccgctcatccgccactacatcgactatttcagccagaag
gtcggcaagcagaagcgtctggcccgcgccgccctcgacgccctgcttgcctacagctat
cccggcaacgtgcgcgaactgatgaacctgtgcgagcggctggtggtcatgtccgagacc
gaggtgatcgacctgcaggacctccccaagcagcttttcggcagtctcgaagagaaaccg
ctgtcgcagtcggagcagaccctgccggtgtggccaggtgacatgaccctggagcagatc
ctggaaagcgtggagcgttcgttgttgagcgacgccatgaaggagcacggcaaccagtac
cggatcgccgaggcactcgggatcaaccagtccaccgtggcccgcaagctcaagaagtac
ggcgtttcctag
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