Geospiza fortis (medium ground-finch): 102033626
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Entry
102033626 CDS
T03755
Symbol
PTCH1
Name
(RefSeq) patched 1
KO
K06225
patched 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
102033626 (PTCH1)
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GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
102033626
NCBI-ProteinID:
XP_005426950
UniProt:
A0A6I9HQ40
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Position
Un
AA seq
1254 aa
AA seq
DB search
MFNPQLMIQTPQEDGANVLTTEALRQHLESALQASRVHVYMYNRQWKLEHLCYKSGELIT
EAGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWINFDPLEFLEELKKI
NYQVESWEEMLNKAEVGHGYMDRPCLNPADPDCPITAPNKNSTKPLDVALVLSGGCYGLS
RKYMHWQEELIIGGTVKNSSGKLVSAQALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDK
AAAILEAWQRMYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSAIRVASGYLLMLA
YACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVG
VDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR
AFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVTRVIQVEPQAYA
ENDNTCYSPPPPYSSHSFAHETQITMQSTVQLRTEYDPHTQVYYTTAEPRSEISVQPVTV
TQDNLSCQSPESTSSTRDLLSQFSDSSIHCLEQPCTKWTLSSFAEKHYAPLLLKPKAKIV
VIFLFLGLLGLSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADY
PNVQKLLYELHRSFSNVAYVLLEEDRQLPKMWLHYFRDWLQGLQDAFDSDWETGKITYNS
YKNGSDDAVLAYKLLVQTGNHAKPIDISQLTKQRLVDADGIINPNAFYIYLTAWVSNDPV
AYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRETSDFVEAIE
KVRAICNNYTSLGISSYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCALFLLNPWT
AGIIVVVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRN
HRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLP
VLLSFFGPYPEVSPANGQDRLPTPSPEPPPGTVRFALPPGHTNNASDSSDSEYSSQTTVS
GISEELHQYETTRGPGAPAHQVIVEATENPLFARSTVLQPEARHQPSPRLRSAGPAGPSG
SSSRDRLGHKARSHSVRSPAFGAAGAAGAAYCQPITTVTASASVTVAVHPALHSHSPRGA
SFPSYEGHHEAGHAPFEDPHVPFNVRCERRNSKVEVIELQDVECEERMPGNSSQ
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacccccagctcatgatccagactccacaggaagatggtgctaatgtactaaca
acagaagcactccgacagcaccttgagtctgcacttcaggccagcagagtacatgtctat
atgtacaacagacagtggaaattggaacatttgtgttacaaatcaggagaactcatcacc
gaagcaggttacatggaccagatcatagaatatctttatccttgcttaattatcactcct
ttggactgcttctgggagggagcaaagctacagtcaggaactgcctatctattaggaaag
cctcctttgcagtggatcaactttgaccctttagaattcttggaagagttaaagaaaata
aactaccaagtggagagctgggaagaaatgctgaataaagcggaggttggtcatggttat
atggatcgaccctgcctgaatcctgctgatcccgattgcccaatcacagctcccaataaa
aattccactaaacctcttgatgtagcccttgttttgagtggtggatgctatggattatca
agaaaatacatgcattggcaggaggagctgattataggtggtacagtcaagaacagttct
ggtaaacttgtcagtgcccaggctttgcaaaccatgtttcagttaatgacccctaagcaa
atgtatgaacatttcaaggggtatgaatatgtttcacatataaactggaacgaggacaag
gcagcagcaattctggaagcctggcagaggatgtatgttgaggttgttcatcaaagtgtt
gcacaaaattctactcagaaggtgctttccttcactacgaccaccctggatgacatcttg
aagtcattttctgatgtcagtgctatccgagtagctagtggctacttactaatgcttgcc
tatgcctgtttaacgatgctgcggtgggactgtgccaagtctcagggtgctgtggggctg
gcaggagtcttgttggttgcactctctgtggctgcaggattgggcctgtgctcattgatt
ggaatttcctttaatgctgccacaactcaggttttgccttttcttgctcttggagttggt
gtagatgatgttttccttctggcacatgcatttagtgaaacaggacagaataagagaatt
ccgtttgaggacagaacaggtgaatgtctgaagcgaacaggagcaagtgtagcccttaca
tctatcagcaatgttactgctttctttatggctgccttaattcctattccagctttaaga
gcattttcactccaagcagcagttgtggtggtgttcaattttgctatggttctgctgatt
ttccctgctatcctgagcatggacctttaccgtcgggaggacaggagactggacatattt
tgctgttttacaagcccgtgtgtcactagagtgattcaggttgagcctcaggcatatgca
gaaaatgacaatacctgctacagtcctccacccccgtacagcagccacagttttgcacat
gaaacccagattacaatgcagtccacagtgcagctgcgcacagaatatgatcctcacacg
caggtgtactacaccacagcagagccccgctcagaaatatctgtgcagccagtgacagtg
acacaagataacctgagctgccagagcccagaaagcacaagctcgacgagggatttgctt
tcccaattctcagactccagtatacattgccttgagcaaccctgtacgaagtggacactc
tcatcttttgcagaaaagcattatgctccattactcctaaaaccaaaagctaagattgtg
gttatttttctttttctgggtttacttgggctcagcctttatggaactacccgggtaaga
gatggactagatctcacagacattgtaccacgggaaacacgggaatatgactttattgct
gcacagttcaagtacttttcattctacaacatgtatattgtgacacagaaagcagactat
ccaaatgtccagaagttactttatgaacttcacagaagtttcagcaacgtggcatatgtt
ttgttggaagaggataggcagctccccaaaatgtggttgcactactttcgagactggctg
caaggacttcaggatgcatttgacagcgactgggaaacagggaagatcacttacaacagc
tataaaaatggttctgacgatgctgttttggcttacaaactcttggtacaaacaggcaac
catgcaaagcccattgacatcagccagttgactaaacagcgtctggtggatgcggatgga
atcattaacccaaatgctttctacatctacctgacagcgtgggttagcaatgaccctgtg
gcctacgctgcctcgcaggccaacatccgcccgcaccgcccggagtgggtccatgacaaa
gcagactacatgccagaaacacggctgaggattccagcagccgagcccatagaatatgct
cagtttcctttctacctcaatggattgcgtgaaacttctgactttgtggaggctatcgag
aaagtgagagctatctgtaacaactacaccagcttggggatctccagctaccctaatggt
tacccttttctcttctgggagcagtacattggacttcgtcactggctcctcttatccatt
agtgtggttttggcttgcacgtttctggtgtgtgccctcttcctcctaaacccctggaca
gctgggatcattgtggtggtgctggctctgatgactgtggagctgtttggcatgatgggt
ctaattggaataaagctgagtgcggtgccggtggttatcctgattgcttctgttggcatt
ggtgtggaattcactgttcatgttgctttggcgtttttaactgccataggagacaggaac
catagggctgtccttgcactggaacacatgtttgcaccagtgctggatggggctgtatcc
actctgcttggggtgttaatgcttgcaggatcagagtttgattttattgtcaggtatttc
tttgctgttttggcaatcctaaccattctgggagttctcaatggattggtgctgcttcct
gttcttctctcattctttggaccataccctgaggtttctccagccaatggacaggacaga
ttgcccacaccatctcctgagccaccccccggtactgtgaggtttgcactgccacctggc
cacacaaataatgcttcagattcctctgattctgagtacagctctcaaaccacagtgtct
ggaattagtgaagagctgcatcagtatgagaccacccgaggtcctggggcaccagcccat
caagtaatagtggaagcgactgagaatcctctctttgcaagatccactgtgcttcagccg
gaagccaggcatcagccgagccctcggctgcggtctgcagggcccgcggggcccagcggc
agcagcagcagggatcgcttgggccacaaggctcgctcgcacagcgttcggagcccggcg
ttcggggccgcgggcgccgcgggagccgcctactgccagcccatcactactgtgactgcc
tcggcctcagtcactgttgctgtccaccctgccctgcacagccacagccctcggggagcg
agctttccatcctacgagggacaccacgaggccggccatgcgccatttgaggacccccac
gtgccttttaatgtgcggtgtgaaagaagaaattctaaagtggaagttatagaactgcaa
gatgttgaatgtgaggagaggatgcctggcaacagctcacaataa
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