Geospiza fortis (medium ground-finch): 102037092
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Entry
102037092 CDS
T03755
Symbol
RAD50
Name
(RefSeq) RAD50 double strand break repair protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03440
Homologous recombination
gfr03450
Non-homologous end-joining
gfr04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102037092 (RAD50)
03450 Non-homologous end-joining
102037092 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
102037092 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfr03032
]
102037092 (RAD50)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102037092 (RAD50)
DNA replication proteins [BR:
gfr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
102037092 (RAD50)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
102037092 (RAD50)
BRCA1-C complex
102037092 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
102037092 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
SbcC_Walker_B
AAA_15
Spectrin
DUF2703
AAA_29
AAA_13
Motif
Other DBs
NCBI-GeneID:
102037092
NCBI-ProteinID:
XP_005418732
UniProt:
A0A6I9HE44
LinkDB
All DBs
Position
Un
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKIANETDVRAQIRLQFRDVNGEVMAVQRSMVCTQKSKEPEFKTLESVITR
TKHGEKVSLSSKCAEIDREMINALGVSKAVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VISIENQLEPLKNSLAVVEQNLTKVMRLDNDVKALESRKRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYQNHQRIVKEKEKRLLDCKRDLDRATKECQRFNSEKSELLIERGRLQLQADRH
QEHIVTRDSLVQSLAAQLELDGFERAPFTDRHIASFHRLVKDRQDRDTEAANRMMREFAQ
KETMKQKQIDEIRDKKTGLERTIDLKSDIQNKKQAELKNVKRELQQLEGFSDRISELDEE
IGKMEHDLETAERNSNIETLEQEVQTLQNEKINLDKALRRLDQEMEQLNLHTTTITQLEM
LKKDKAEKEDQIRKVKSRHSEELTSLLGYFPNKKQLEDWLHGKNKKINQTRDTLANLNKR
LSSVEYDKTYASNELKKKEAQLSSHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRQTVVELQDKEIPDLRNKIQNANRDLTGLKGEIEEQESLLQTALS
EEEGAKARLQDITLMERYQTDIRDVERKIAQQEAKLLCVNLNRTVLQVSREKQEKKQLWD
TVTSKIELNQKHKQDQQSQIQQLKSAVNELKAEKLQIVSSMQRRRQLEEQTVELTTEVQS
LCREIKEAEEQILPLEAKLDKLQHEKEELVNKRTASNKETQEKMNNINEKVKDINKYVKE
IENYIQQGKEDYKKQKESELEEVNSRLAACEKQKEKISKEMEMTRQDIDTQKIQERWLED
NLTLRKRNEELKEVEDNIKKLMKEMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRG
FEEEIVRFRKELREPQFRDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDADENVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCINCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggattgaaaaaatgagtatcctcggagtgaggagtttcggaatagaagataaa
gacaaacaaattatcactttctttaatccattaactattttggtgggaccaaatggtgca
ggaaaaacgactatcatcgaatgtcttaaatatatatccactggtgattttcctcctggc
accaaaggaaaaacatttgttcatgatccaaagattgccaatgaaacggacgtccgagct
cagattcggttacagttccgagatgtcaacggggaggtcatggctgtgcagcgctccatg
gtctgtacccagaaaagcaaggaacctgaatttaaaacactggaatctgtcattactaga
acaaagcatggtgagaaggtcagtctgagttccaagtgtgctgaaatagatcgggagatg
atcaacgcccttggtgtttccaaagctgtgcttaacaatgtcattttctgtcaccaagaa
gaatccaactggccattaagtgaagggaaggccctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtacatcaaagcactcgaagctctgcgtcaggtacggctgaaacaaagc
ttgaaagtaaaagagtgtcagacagaactgaaatatctgaaacagaataaagagaaagca
caggaaatccaggatcatctcagcaacagagaagctcagctggctgcttctaaggagaat
gtaatatcaattgagaaccagcttgagcctctaaagaactctctggcagtagttgagcag
aatctcacaaaagtaatgaggttggacaatgatgtgaaggccctggagagcaggaagcgg
cagatggaaaaagataatcaagatttgcaacagaagatggaaaaggtttttcaaggaaca
gatgaacaactaagggatagataccagaaccaccagagaattgtgaaggagaaggagaag
agattgttggactgtaagcgtgatttagatagagccactaaagaatgccagagatttaac
agtgagaaatcagagctgcttattgaacgaggtcgtcttcaactgcaggcagatcgtcac
caggagcacattgtgaccagggattccttagttcaatctctggcagcacagctggagttg
gatggctttgagagagcccctttcactgacaggcacattgccagttttcacaggctggtg
aaggacaggcaggacagagacacagaagctgcaaatcgtatgatgagagaatttgcacag
aaggaaacaatgaaacaaaaacagatagatgaaataagagacaagaaaactggattagaa
agaaccattgacctgaaatcagacattcaaaataagaaacaagcagagctgaagaatgtc
aaacgtgaattgcagcagttggaggggttttcagacaggatcagtgagttggatgaggag
attggcaagatggaacatgatctggagacggctgagaggaacagcaatatagaaacactg
gaacaggaagtacagactctgcaaaatgagaaaataaacctggacaaagctcttaggagg
ctggatcaagagatggagcagttgaatctgcacaccacaaccattacccagttggagatg
ctgaagaaagacaaagcagagaaagaagatcagatcagaaaagtaaagtcaagacattct
gaggaactaacatcacttctgggatactttcccaataaaaaacaacttgaagactggctt
catggtaaaaataaaaagattaatcagacaagggatactcttgctaatctgaacaagcga
ctgtcatcagtagaatatgataaaacttatgccagtaatgagctaaaaaaaaaagaagcc
cagttgtccagtcatgaagcaaaactttttgatgtttgtggaagtcaagattttgacagt
gacctgaacaaacttcaagatgaaattgaaaaaagttccaaacagcgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacagctgacagaggagaaccagtcttgt
tgtccagtttgccaaagagtttttcagacagaggctgagctgcaggatgtcatcagtgat
ctgcagtctaaactgcgcctggccccagacaaactgaagtccacagagtctgaactgaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaacccctacggcaaactgtagtt
gaactccaagataaggaaattccagacctgaggaacaagatccagaatgcaaacagagat
ttaacaggcctgaagggtgagatagaagaacaagaatcacttctccagacagctttgtct
gaggaagaaggtgccaaagcacgtttacaggatataactctgatggaaaggtatcagact
gatatccgggatgttgaacgaaaaattgctcagcaggaggctaagctgctatgtgtcaat
ttaaataggactgtgcttcaagtaagcagagaaaaacaagagaaaaaacagctgtgggat
acagttaccagtaaaattgagttaaatcagaaacacaagcaggaccagcaaagccagatt
cagcagctgaagagtgcagtgaatgagctcaaggcagagaagctgcagattgtcagcagc
atgcagcggcggcggcagctggaggagcagactgtggagttaaccactgaggttcagtcc
ttatgcagagagatcaaggaagcagaagaacagatacttcctttggaggcaaagttagac
aaattgcagcacgagaaggaggaactagtgaataaaaggactgcaagtaataaagaaaca
caagagaagatgaataacataaatgagaaagttaaagatataaacaaatatgtgaaagaa
attgaaaactacattcaacaaggaaaagaagactataaaaagcaaaaggagtctgaactt
gaagaagtaaattctcgtttggctgcctgtgagaaacaaaaggaaaagataagtaaagag
atggaaatgacccgacaagatattgacactcaaaagatccaggagaggtggctggaggat
aatctcactttgaggaagcggaatgaggagctaaaagaagttgaagacaatataaaaaaa
cttatgaaggagatgggagaaatgaaagtcccccagatgaaaaatgagcagaagcatttg
gaggagaaaatagaatctctgaaaaggaaccatcacgtggcccttggccgccagcggggc
tttgaggaggagattgttcgcttcaggaaggagctccgagagccacagttcagagatgca
gaggaaaaatacagggacatgatgattgtcatgagaacaacagagctggtgaacaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaaaatg
gaagaaattaacaaaataattcgggacctgtggcgaagcatttacagaggacaagatatt
gaatatatagaaattcgctctgatgcggatgagaatgtctcagccactgacaaaagaaga
aattacaattacagggtggtgatggtgaagggagatacagcactggatatgagaggaagg
tgcagtgctgggcaaaaggtgcttgcttctctcatcattcgccttgctctagcagaaaca
ttctgtatcaactgtggcattctggccctggacgagcctacgaccaaccttgaccgagaa
aacatcgagtccctggcacatgccctggtggagataataaagagccgcttacaccaacgc
aactttcagctgctggtgattactcatgatgaagattttgttgaacttctgggccgttct
gagtatgtggagacattctacaggataaagaagaacattgaccagtgctctgagatcatg
aaatgcagtgtcagctctctaggctcctatgttcattag
DBGET
integrated database retrieval system
