Geobacillus sp. GHH01: GHH_c31180
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Entry
GHH_c31180 CDS
T02455
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ggh
Geobacillus sp. GHH01
Pathway
ggh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ggh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GHH_c31180 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ggh03019
]
GHH_c31180 (rnr)
03016 Transfer RNA biogenesis [BR:
ggh03016
]
GHH_c31180 (rnr)
Enzymes [BR:
ggh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GHH_c31180 (rnr)
Messenger RNA biogenesis [BR:
ggh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GHH_c31180 (rnr)
Transfer RNA biogenesis [BR:
ggh03016
]
Prokaryotic type
tRNA degradation factors
GHH_c31180 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AGE23610
UniProt:
L8A109
LinkDB
All DBs
Position
complement(3102181..3104457)
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AA seq
758 aa
AA seq
DB search
MDHVLAERILTFMRDEAYKPLTVEELEEAFGIEDADGFKEFVKTLVAMEEEGLVVRTRSN
RYGVPERMNLVRGKVTGHPKGFAFVTPEEPGLDDIFIPPSELKNAMHGDTVLVRVQADSS
GARREGTIVRILERGVKEVVGTYTESKYFGFVIPDDKRIVNDIFIPKNAANGAVEGHKVV
VRLTSYPEGRMSAEGEVVQILGHKNDPGVDILAIIYKYGLPLQFPEDVIEHANRVPDVIT
EKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPID
REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVRHEIFPS
VIRTAERMTYSDVNKILVDKDEALREKYAPLVPMFELMAELADILRAKRIKRGAIDFDFK
EAKVLVDENGKPYDVVLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHEDPKPE
KLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQARYDAE
SLGHYGLSTEFYTHFTSPIRRYPDLIVHRLIWTYLINGQMDLDTQQKWAEKLPEIAEHAS
DMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT
DDYYRYDERHYALIGERTGKMYRIGDEITVRVINVNKDERIVDFEVVGMKGRRPPKAKAA
PVVIEGKKQKQAKAKAEAKTNSGKSRHAKAKKKKKKKR
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggatcatgtgttggccgaacgcattttaacgtttatgcgcgatgaggcgtacaaaccg
ctgaccgttgaggaactggaggaagcgtttgggattgaggatgcggacgggtttaaggaa
tttgtcaaaacgcttgtcgccatggaagaggaaggccttgtcgtccggacgcgcagcaac
cgctacggcgtgcctgagcggatgaatctcgtgcgcggcaaggtgaccggccacccgaaa
ggattcgcgtttgtcacaccggaggagccgggactggatgatattttcatcccgccgtcc
gaattgaaaaacgcgatgcatggcgacacggtgcttgtgcgcgtccaagccgattcatcc
ggggcgcgccgcgaaggaacgatcgtccgcattttggagcgcggggtgaaagaggtcgtc
ggcacgtacacggaaagcaaatatttcggctttgtcatcccggatgacaaacggatcgtc
aatgacattttcatcccgaaaaacgcggcgaacggcgcggtcgaagggcataaagtcgtc
gtccggctcacctcgtacccggaaggacgaatgagcgctgaaggggaagtcgtgcaaatt
ctcggccataaaaacgacccgggcgtcgacattttggcgatcatctataaatacggcctt
ccgcttcaatttccagaagacgtgatcgagcacgccaaccgggtgccggacgtcattacg
gagaaagacttggaagggcgccgcgatttgcgcggcgagatgatcgtcaccattgacggc
gaggatgcgaaagacttagacgatgcggtgacggtgacgaagcttgaaaacggcaactat
aagctcggcgttcatatcgccgatgtcagctactatgttgaggaaggctcgcctattgac
cgcgaggcgtatgaacgcggcacgagcgtttatttggttgaccgcgtcatcccgatgatc
ccgcatcggctgtcgaacggcatttgctcgctcaacccgaaagtcgatcggctgacgctc
tcgtgcgaaatggaaatcaccccgcaaggagaagtcgtccgccatgaaattttcccaagc
gtcatccgcacggcggaacggatgacgtattccgatgtcaataaaattctcgttgacaaa
gacgaagccttgcgggaaaaatatgcgccgcttgtgccgatgtttgagctgatggctgag
cttgccgacattttgcgggcaaagcggataaagcgcggggcgattgatttcgattttaag
gaggcgaaggtgcttgtcgatgaaaacggcaagccgtacgatgtcgtcttgcgcgagcgg
tcggtcgctgagcggttgattgaagagtttatgctggcggcgaacgaaacggtggctgag
catttccattggttgaacgtgccatttatttaccgtgttcacgaggatccgaagccggaa
aaactgcagcgctttttagagttcatcacgaacttcggctatgtcgtgaaaggaacgggc
aaccaaatccatccgcgcgccctccagcaaattctcgaagcggtgcgcggcgagccggaa
gaaatggtgatctcgaccgtcatgcttcggtcgatgaaacaggcgcgctatgacgccgag
agcctcggccattacggcctgtcgaccgagttttacacccattttacgtcaccgatccgc
cgctacccggatttgatcgtccatcggttgatctggacgtatctcattaacggccagatg
gatcttgacacccagcaaaaatgggcggaaaagctgcctgaaattgcggaacacgcttcc
gatatggagcggcgcgccgttgaggcggagcgggagacggacgatctgaagaaaaccgag
tttatggaagacaaaatcgggatggagtttgacggcattatcagctcggtgacgaacttc
ggcttgttcgttgagctgccgaacacgatcgaaggcttggtgcacgtcagctacttaacg
gacgactattaccgctacgacgaacgccactacgcgttgatcggcgaacggaccgggaaa
atgtaccgcatcggcgatgaaatcaccgtccgcgtcatcaacgtcaacaaagacgaacgg
atcgtcgattttgaagtcgtcggcatgaaagggcgccgcccgccgaaagcgaaagccgct
ccggtcgtcattgaagggaaaaagcaaaaacaggccaaggcaaaggcggaagcgaaaacg
aacagcggcaaaagccgccacgcgaaggcgaaaaagaagaaaaagaaaaaacggtga
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