Gossypium hirsutum (upland cotton): 107922770
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Entry
107922770 CDS
T04793
Name
(RefSeq) uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107922770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107922770
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107922770
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107922770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRS1_YhbY
NikR_C
Motif
Other DBs
NCBI-GeneID:
107922770
NCBI-ProteinID:
XP_016708419
UniProt:
A0A1U8L5L4
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Position
A11:17711566..17714881
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AA seq
462 aa
AA seq
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MAGRVLFSASVGLRKSHSLMILFSNSIISTPNASLPKASSLVDVMCKAFGPQQAFSPTYD
RKRFLLERHVWIHSAPSLNASENVVGTVNHSEGVSSIKDAYSGNLKAKRKKLKGKRAVVR
WLKFFRWKKKKDYERMTAEEKILYKLRKARKKEERLATALNKIEPTESSETTHDPEILTP
EEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSPEEVKEIAAE
LARLTGGIVLDIHEDNTIIMYRGKNYSQPPTEIMSPRVTLSRKKALDKSKYRDGLRAVRK
YIPKLEQDLELLRAQAANNFNPVEHVPNADDQNVGSGKSSSTPLEGSNKLKEFLDESKEL
TENESKTDLLLASESEDLSDIFETESDAETEEREEQPLFLDEFEKFPVESDGEPEDFEEH
LRQITMGSKVPVTSEEDVNSPNFDEVDRIFLRAASLLKKKRS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtagggttttattttcagcttcagtgggtctccgaaaatctcatagcctcatg
attcttttctctaattcaatcatttccaccccaaatgcgtcccttcccaaagccagtagt
ttggttgatgttatgtgcaaggcttttggtccacagcaagctttttccccaacctatgac
agaaagaggtttctgcttgagaggcatgtctggattcattcagctccatctctgaatgct
tctgaaaacgttgttgggacagtcaaccattccgagggagtttctagcatcaaggatgct
tatagtggtaatcttaaggcaaagaggaagaaattaaagggtaaacgagctgtagtaagg
tggttgaaatttttcaggtggaagaagaagaaagattatgaaagaatgacagctgaagaa
aaaattctttacaaacttagaaaggctcggaagaaagaagaaagacttgctacagcatta
aataagattgaacccacagaatcatcggaaacaacccatgatccagaaatattgactcca
gaagagcactttttctttttgaagatgggcctcaagtgcaaaaattatgtgccagtaggt
agacggggaatttaccagggtgtaattttgaacatgcacctccactggaagaaacatcag
actttgaaggtggtggttaaaacattctcaccggaggaagtcaaggagattgctgctgag
ctagcaagattgacaggtgggattgtgctcgacattcatgaagataatacaataattatg
tacagaggaaagaattattctcagccaccaacagagattatgtcaccccgggtcacactt
tctagaaagaaggctctggataaatccaaatatagggatggccttagagctgttaggaag
tacatcccaaagcttgagcaggatctcgagttgctacgtgctcaagctgcaaacaacttc
aatcctgtggaacatgtgccaaacgctgatgatcagaatgtgggttctgggaagagttca
agcacgccactggagggttcaaataaattgaaagaatttttggatgagagcaaggaactt
acagaaaatgaatccaaaacagatttgcttttggcttctgaatctgaggacctgtcagat
atttttgagactgagtctgacgcagagacagaggagagggaagaacaaccactttttctg
gatgaatttgagaaatttccagtagaaagtgatggagaacccgaagattttgaggagcac
ttacgccaaataacaatgggctctaaagtccctgtgacatctgaggaagatgttaactct
ccaaactttgatgaggtagatcggatatttttacgtgctgcttcactcctaaagaaaaag
aggagttag
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