Guyparkeria halophila: GM160_06895
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Entry
GM160_06895 CDS
T06369
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ghl
Guyparkeria halophila
Pathway
ghl02020
Two-component system
ghl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ghl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GM160_06895
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GM160_06895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghl03021
]
GM160_06895
Transcription machinery [BR:
ghl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GM160_06895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
VMAP-M8
HTH_21
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QGT79589
UniProt:
A0A6I6CZC3
LinkDB
All DBs
Position
1523134..1524609
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AA seq
491 aa
AA seq
DB search
MKAGLELRLGQSLAMTPQLQQSIRLLQLSTLELSLEIQQALDSNPLLEVAEDEREEDEAT
EATTAEEQDPGAQAGEELLEDRKDKSADEDLVVDSSWDDYYESDGSTALSASAPGEDYDP
FATQSTGEDNLRDHLLSQVHLASLSDTDRRIATALIESLELSGYLEEPLDEIVAMLAEDL
PGIDTEEVEATLHYIQQLDPVGVAARSLAECLTIQIDQHHADDPAADDARALLQDDWLEA
IARRELPQVIKGLGISRERLEAALRLIQVLDPRPGLSIGDTAADYIKPDVIVTHREDGWH
VDLNPEIAPRLRVNQTYASLIDRSSRGKDATYIRNHLQEARWFIKSLRSRNESLLNVARE
IVRRQIEFFEQGEIAMKPLVLREIAETLELHESTVSRVTTNKYMLTPRGVFEFKYFFSSH
VGTSDGGECSATAIRARIKKLVEEENPKKPLSDAKIATMLGDEGIDVARRTIAKYREAMG
IASSTDRKRLI
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaggtctcgagcttcgcctgggccagtcgctggccatgacgccgcagttgcag
cagtccatccgcctgctgcagctctccacgctggagctgagcctggagatccagcaggcg
ctggacagcaacccgctcctggaagtggccgaggacgagcgcgaggaggacgaggcgacc
gaggcgaccaccgccgaggaacaggaccccggcgcccaggccggcgaggaactgctcgag
gatcgcaaggacaagtcggccgacgaggacctggtggtcgattcctcctgggacgactac
tacgagtccgacggcagcaccgccctgagcgccagcgccccgggcgaggactacgacccc
tttgccacgcaatcgacgggtgaggacaacctccgcgaccatctgctcagccaggtccat
ctcgcctccctctcggacaccgaccgtcgcatcgccaccgcgctgatcgagtcgcttgag
ctctccggctatctcgaggaaccgctggacgagatcgtggccatgctcgccgaggacctg
ccgggaatcgacaccgaggaggtggaggccacgctccattacattcagcagctcgacccg
gtcggggtggcggcgcgatcgctggccgaatgcctgaccatccagatcgaccagcatcac
gccgacgacccggcggccgacgatgcccgcgccctgctccaggacgactggctcgaggcc
atcgcccggcgcgagctgccgcaggtgatcaaggggctgggtatcagccgcgagcggctc
gaggccgccctccgcctgatccaggtgctcgatccccgcccggggctgtcgatcggcgac
accgccgccgactacatcaagccggacgtgatcgtcacccaccgcgaggatggctggcat
gtcgacctcaaccccgaaatcgccccgcgcctgcgcgtgaaccagacctacgccagcctc
atcgaccgctccagccgcggcaaggacgcgacctacatccgcaaccacctccaggaggcc
cgctggttcatcaagagcctgaggagccgcaacgagtcgttgctgaacgtggcgcgggag
atcgtgcggcgccagatcgagttcttcgagcagggcgagatcgcgatgaaaccgctggtg
ctgcgcgagatcgccgagacactcgaactgcacgaatcgacggtcagccgggtcaccacc
aacaagtacatgctcaccccgcggggcgtgttcgaattcaagtatttcttctccagccac
gtcggcaccagtgacgggggcgaatgttcggccaccgccatccgcgcccgcatcaagaag
ctcgtcgaggaagaaaatcccaagaagcccttgagcgacgccaagattgcgaccatgctt
ggagacgaggggatcgacgtcgcgcgacgcacgatcgccaagtaccgcgaggcgatggga
attgcctcgtcaacagaccgcaagcgactgatataa
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