Gordonia iterans: C6V83_07610
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Entry
C6V83_07610 CDS
T05370
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
git
Gordonia iterans
Pathway
git03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
git00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6V83_07610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
git03021
]
C6V83_07610
03019 Messenger RNA biogenesis [BR:
git03019
]
C6V83_07610
Transcription machinery [BR:
git03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C6V83_07610
Messenger RNA biogenesis [BR:
git03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C6V83_07610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
HC2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVM02094
UniProt:
A0A2S0KK83
LinkDB
All DBs
Position
1634316..1636181
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AA seq
621 aa
AA seq
DB search
MLLPELRGLAGELGIKGISGMRKGDLIDAIRAHQQGGGAASAPSKAPKSAAPKREAPKTE
APKTEAPKTEAPKTEAPKTEAPKTEAPKTEAPKTEAPKTEAPKTEAPKTEASAAPAAQTE
NDKPAAGDKPAGGKSEQAGERRRERGDRNRGDGNRGDGGKQSGDGQGRNADGKNENTKNE
NRGGGNRNQGNQNQNQNDDDGEGGGRRRGRRFRERNRRGRDRGGDGGGEPQLNEGDTVAP
VAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRRYGLRRGDAITGAVKVPREGSENQSG
GNQRQKFNPMVRLDTVNGGDPELAKKRPEFSKLTPLYPNQRLRLETTPERLDTRVIDLIM
PIGKGQRALIVSPPKAGKTTILQDIANAIATNNPECHLMVVLVDERPEEVTDMQRSVKGE
VIASTFDRPPSDHTSVSELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS
GGVDSTALYPPKRFLGAARNIEHGGSLTIIASALVETGSTGDTVIFEEFKGTGNAELKLD
RKISERRVFPAVDVNLSSTRKDELLLSPDEFAVVHKLRRLLAGLDSQQAIDLLISQLKKT
KNNVEFLMQVQKTAPGTLNQD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttcccgaactgcgcggcctggccggcgagctgggtatcaagggcatctcgggg
atgcgtaagggggatctgatcgacgcgatccgtgcgcatcagcagggcggcggtgccgcg
agcgccccgtcgaaggcgccgaagtcggcggccccgaagcgcgaggccccgaagacggaa
gccccgaagacggaagccccgaagacggaagccccgaagacggaagccccgaagacggaa
gccccgaagacggaagccccgaagacggaagccccgaagacggaagccccgaagacggaa
gccccgaagacggaagccccgaagacagaggcctccgccgcgccggcggcgcagaccgag
aacgacaagcccgccgcaggggacaagcccgccggcgggaagtccgagcaggccggcgag
cgccgccgcgagcgcggggaccgcaaccgcggcgacggcaaccgcggcgacggcggcaaa
cagagcggcgacggccagggccgcaacgccgacggcaagaacgagaacaccaagaacgag
aaccggggcggcggcaaccgcaaccagggcaaccagaaccagaaccagaacgatgacgac
ggcgagggcggcggacgccgccgcggccgtcgcttccgcgagcgcaaccgccgcggccgc
gaccgcggcggagacggcggcggcgagccgcaactgaacgagggcgacaccgtcgcaccc
gtcgccggaatcctcgacgtcctcgacaactacgccttcgtgcggacctccggctacctc
gccgggcccaacgacgtctacgtgtcgatgaacatggtgcgccgctacggtctgcgccgc
ggcgatgccatcaccggtgcggtcaaggtgccccgggaaggcagtgagaaccagagcggg
ggcaaccagcgccagaagttcaacccgatggtccgcctggacaccgtgaacggcggcgac
cccgaactcgccaagaagcggcccgagttctccaagctgacgccgctgtacccgaatcag
cgtctgcgtctggagaccaccccggagcggctcgacacccgcgtcatcgacctgatcatg
ccgatcggcaaggggcagcgtgcactgatcgtgtcgccgccgaaggccggcaagaccacg
atccttcaggacatcgcgaacgcgatcgccaccaacaaccccgagtgccacctgatggtg
gtgctggtcgatgagcggcccgaagaggtcaccgacatgcagcgcagcgtcaagggcgag
gtcatcgcctcgacgttcgatcgtccgccgtcggatcacaccagcgtctccgagctcgcc
atcgagcgcgccaagcgcctcgtcgagcagggcaaggacgtcgtcgtgctgctcgactcg
atcacccggctcggccgcgcgtacaacaacgcctcgcccgcgtcgggccggatcctgtcc
ggtggcgtcgactccaccgcgctgtacccgcccaagcgcttcctcggtgcggcccgcaac
atcgagcacggcggctcgctgacgatcatcgcgtcggcgctggtcgagaccggctcgacc
ggtgacacggtgatcttcgaagagttcaagggcaccggcaacgccgagctcaagctcgac
cggaagatctctgagcgccgcgtcttcccggccgtcgacgtcaacctgtcgagcacccgc
aaggacgagctgctgctctcgcccgacgagttcgccgtcgtgcacaagctgcgccgcctc
ctcgccggcctggacagtcagcaggcgatcgacctgctgatctcgcagctgaagaagacg
aagaacaacgtcgagttcctcatgcaggttcagaagacggcccccgggactctcaaccag
gactga
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