Grimontia kaedaensis: K6Q96_03165
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Entry
K6Q96_03165 CDS
T09175
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gkd
Grimontia kaedaensis
Pathway
gkd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gkd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K6Q96_03165 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gkd03400
]
K6Q96_03165 (recD)
Enzymes [BR:
gkd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K6Q96_03165 (recD)
DNA repair and recombination proteins [BR:
gkd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K6Q96_03165 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
DEAD
AAA_16
nSTAND3
PhoH
AAA_28
T2SSE
TrwB_AAD_bind
CbiA
NTPase_1
SRP54
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
USH03033
LinkDB
All DBs
Position
I:651916..653913
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AA seq
665 aa
AA seq
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MAISEKLNALYKRKAIRAIDRQFSQFIGEQLGDVESPMVGWAALVSFELGKGNVCIDLSA
LDSARLFDLMPLESAELAILMTPENALALVSTSPVVGDGSVPKPMVLSGSRLYLHRYWAA
ERLVTNEITARAKELPLPMTLRGVLDDLFLPDMALLRRFYNTWEDSEKAEKLVDFFDITD
LTQVDVDVLKTALDAQATDAQVLSLVPDSARLNWQKVAAAVALSYRFAVISGGPGTGKTT
TVAKLLAAIVSSSDNPNGPEIKLVAPTGKAANRLTESIGKAVAALPVSNEVRDKIPTQAS
TIHRLLGAIPNRVEFRHHAGNRLHLDVLVVDEASMVDLPMMARLLAALPQHARVILLGDR
DQLASVEAGAVLGDICLHAGSGFSAERAKTLASLTGFCMPQEASVPVVSDGVCLLRKSYR
FHAKSGVGQLAYAINAGETRWVERVLQRGFSDIALHDLDGDVYGEAIAMVVNGYRGYLSA
LSEGADNRTLLKHFSDIRLLCALSDGPFGVKGLNTAIEKALTKVELIAPGEEIFYPGRPI
MVTQNDHGLGLYNGDIGIVVKQEEGLRVVFEMADGSVKAFLPSRLPEHQTAYAMTIHKSQ
GSEFSHTILMLPPTPTPVMTRELVYTGVTRAKDRLDVYATRTSLARAVKRKTQRFSGLAD
ALHVR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcgataagtgaaaaactcaacgcgctgtataagcgtaaagccatcagagcgatcgac
cgtcagttttcccagtttatcggtgaacaactcggcgacgttgaatcacctatggtggga
tgggctgctttagtcagctttgagctgggtaaaggtaatgtatgtattgacttgtctgct
ttagacagcgcaaggctctttgacttgatgcccttggaatcggcagaacttgcgatattg
atgacgcctgaaaatgccttggctctggtttccacatctccagttgtcggcgatggcagt
gtaccgaaacctatggtgctcagtggttcccgcctttatcttcatcgctattgggccgcg
gagcgcttggtaactaatgaaattacagcacgagcgaaagagctgccgttgccgatgacg
ctgcgtggcgtgttggacgatcttttcctgccggatatggctttgcttcgtcggttctac
aacacatgggaagacagcgaaaaggctgagaaactggtcgacttcttcgacatcactgat
ttgactcaggttgatgtagacgtactgaaaacggcgttagatgcacaagccacggatgcc
caggtgctgagtctagtgccagactcagcacgattgaactggcagaaggtcgctgcagcc
gtggcgctcagttatcgctttgccgtgatctctggtggtccgggaacaggaaaaaccacg
acggtagcaaagcttctggcggcgattgttagtagtagcgacaatccaaatggccctgaa
atcaagctggtggcaccgacggggaaagcagcaaaccgcttgaccgagtccatcggaaag
gccgttgcggctttgccggtgagtaatgaggtgagagacaaaattccgactcaggcatca
accattcaccgactgcttggtgccattccaaaccgtgttgagtttcgacatcatgctggc
aaccgtcttcaccttgatgtgctggtggtcgatgaagcatccatggttgatttacctatg
atggcccgattgctcgcggcattgccccagcatgccagagtgattcttctgggagatcgc
gaccagttagcttctgtagaggcgggggcggtgttgggtgatatctgtcttcatgctgga
agtggttttagtgctgaacgcgcaaagaccttagcttcactgacaggcttttgtatgccg
caggaagcttctgtgcccgttgtgtctgatggcgtatgtttgctgcgcaaaagctaccgc
ttccatgctaagtccggtgttggccaactggcttatgccattaatgcgggcgaaactcgc
tgggttgaaagggtgctgcaacgaggctttagtgatatcgcccttcatgatcttgatggc
gatgtgtatggcgaagccattgctatggtggtcaatgggtaccgcggctatctttcggca
ttatcagagggtgcagataaccgcaccttgctgaaacatttctctgatatccgtctgctg
tgcgcgctttcagatggcccgtttggggttaaaggcttgaacacagcgattgaaaaagcg
ctaaccaaagtggagcttatcgcaccaggagaagagattttctacccggggaggccaatt
atggtgacgcagaacgaccacggccttggtttgtacaacggtgatataggcattgtggtg
aagcaggaagaaggacttcgcgtggtgtttgaaatggcggatggttcagtaaaagccttt
ctgccaagccgtcttcctgagcatcaaactgcctacgcaatgacgattcacaaatcccag
gggtctgaattcagtcataccattttgatgttgccacctaccccgacccccgtcatgaca
agagagctggtgtataccggtgtgacacgggcaaaagacaggttggatgtttatgccacc
cgcaccagtttggcgcgggcggtgaaacggaaaacgcagcggtttagcggcttggcagac
gcattacacgtccgttaa
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