Gordonia mangrovi: NWF22_12575
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Entry
NWF22_12575 CDS
T08472
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gmg
Gordonia mangrovi
Pathway
gmg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NWF22_12575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmg03400
]
NWF22_12575
Enzymes [BR:
gmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NWF22_12575
DNA repair and recombination proteins [BR:
gmg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NWF22_12575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UVF76240
LinkDB
All DBs
Position
complement(2770028..2772409)
Genome browser
AA seq
793 aa
AA seq
DB search
MAGGESLDVDGRRIPITNLDKVLYPTTGTRKFEVIDYYSRIAEVMLPHLAGRPITRKRWP
NGVESMPFFEKDLPSSAPDWLARFGEQHSTRVITYPLATSRADLVWFGQMAALELHTPQW
RVPADGAAPKADRLVLDLDPGPGVPLTQCAEVALMIRDMLAAAGLTAFPVTSGGKGMHLY
ARFDRPVSPEAARTVAKQIATSLAAAHPDDITATMAKSVRDRKVFIDWSQNSGSKTTLAP
YSMRGREQPWVAAPRSWGELADPDLAQLLFDEVLERVESDGDLLADLDEPHDLAPANEEV
PPTAQELIEATSNRPAPNPVVNLGEYRRKRDESKTPEPFGDDAHRERTGSDDTAGNPIFV
IQEHHARRLHYDFRLERDGVLVSWAVPKNLPDDPGQNRLAVHTEDHPMDYADFEGDIPAG
EYGGGHVEIWDRGTYETEKWRDNEVIVRLHGERIQGRYALIKTGDKNWLAHLMSDEPRPI
LPDSLRDPRPMLATDESIENLDGRDWAFEGKWDGYRILLRYIDGDFRLTSRSGIDMTADF
PELRSIADDLGLLDVVLDGEVVALDASGRTNFTLLSARNNTEEDLTLKFYIFDILYLNGT
SLLRRPWSQRRELLDELAPAFAHSAFAEVPALLPGPGRAALEESRAQGYEGVVAKRRSST
YQQGRRTSQWLKHKNWSDIEVVVGGYRPGRGNRAHTIGSLLLGLPEDTGLRYVGRVGTGF
TDAQLRALAEELEPLRIKRSPFVDKLDRPVSSSAVWVLPKIVGEVRFMDWTTTGHLRHPS
WRGIRRDKLPGDL
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggccggtggagagagcctcgacgtcgatggccggcgtatccccatcaccaatctcgac
aaggtgctctacccgaccaccgggacccggaagttcgaggtcatcgactactattcgcga
atcgccgaggtgatgttgccccacctcgccggtcgcccgatcacccggaaacgctggccc
aacggtgtcgagtcgatgccgttcttcgagaaggacctgccgtcgtcggcgccggactgg
ctcgcccggttcggcgagcaacacagcacacgcgtcatcacctacccgctcgccacgtca
cgcgccgacctggtgtggttcggccagatggccgcgctggaactgcacaccccgcagtgg
cgggtgccggccgacggggcggcgcccaaggccgaccgcctcgtgctcgacctcgacccc
gggccgggggttccgctgacgcagtgtgccgaggtcgcgctgatgatccgcgacatgctc
gccgcggccggtctgaccgccttcccggtgaccagtggcggcaaggggatgcatctgtac
gcacgtttcgaccggcccgtctcccccgaggccgcccgcaccgtggccaagcagatcgcc
accagcctggcggccgcccaccccgacgacatcaccgcgaccatggcgaagtcggtccgc
gaccggaaggtgttcatcgactggagtcagaacagcggatcgaagacgaccctcgcgccg
tattcgatgcgcggtcgcgagcagccgtgggtggccgcgccgcgctcctggggcgaactc
gccgatcccgacctcgcccagctgttgttcgacgaagtcctcgagcgcgtcgagtccgac
ggtgacctcctcgccgacctcgatgagccgcacgatctcgccccggcgaatgaggaggtc
ccaccaaccgctcaggaactgatcgaggccacctcgaacaggcccgcaccgaacccggtc
gtcaacctcggcgaataccgccgcaagcgcgatgagtccaagacccccgaaccgttcggc
gacgacgcacatcgtgagcgcacagggtcggacgacaccgccggcaacccgatattcgtc
atccaggaacaccacgcccgacgactgcactacgacttccggctcgagcgcgacggtgtg
ctggtgtcctgggcggtgccgaagaacctgcccgacgatcccggacagaaccggctggcc
gtgcacaccgaagaccatccgatggactacgccgacttcgaaggcgacattccggcaggt
gaatacggcggcggacatgtggagatctgggatcgcggcacctacgagaccgagaagtgg
cgcgacaacgaggtcatcgtccggttgcacggcgaacgcatccagggccgctacgcgctg
atcaagaccggcgacaagaactggctcgcccatctgatgagcgacgaaccgcggcccatc
ctgcccgacagcctgcgcgacccgcgtcccatgctggccaccgacgaatccatcgagaac
ctcgacgggcgcgattgggcgttcgagggcaagtgggacggctaccgaatcctgttgcgc
tacatcgacggagacttccgcctcacctcccgctcgggcatcgacatgaccgccgacttc
cccgaactgcggtccatcgccgacgatctgggtctcctcgacgtggttctcgacggcgag
gtggtggccctcgacgccagcggtcgcaccaatttcaccctgctgtcggcccgaaacaac
accgaggaggacttgacgctgaagttctacatcttcgacatcctctatctcaacggcacc
tcgctgctgcggcgcccgtggtcgcagcgacgtgaactactcgacgaactcgcgccggcc
tttgcccattcggcctttgccgaggttccggcactgctacccgggcccggccgtgccgcc
ctcgaggagagccgcgcacagggctacgaaggtgtcgtcgcgaagcggcggtcgtcgacc
tatcagcaggggcgtcgaacgtcccagtggctcaagcacaagaactggagcgacatcgag
gtggtggtgggcggataccggccggggcgcggcaaccgggcgcacacgatcggatcgttg
ttgctggggttgcccgaggacaccggcctgcgctacgtcggtcgcgtcggcacagggttc
accgacgcccaattgcgagcgctggccgaagaactcgaaccgctgcggatcaagcgcagc
ccgttcgtggacaaactcgaccggccggtttcctcgagcgcggtctgggtactgcccaag
atagtcggcgaggtgcggttcatggactggaccaccaccggccacctacgccatcccagc
tggcgcggtatccgccgggacaaactgcccggcgacctctga
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