Glutamicibacter mishrai: NMP99_15560
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Entry
NMP99_15560 CDS
T08378
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gmi
Glutamicibacter mishrai
Pathway
gmi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NMP99_15560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmi03400
]
NMP99_15560
Enzymes [BR:
gmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NMP99_15560
DNA repair and recombination proteins [BR:
gmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NMP99_15560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UTT39408
LinkDB
All DBs
Position
3279956..3282436
Genome browser
AA seq
826 aa
AA seq
DB search
MARKEQTAKVAGHELKVSNLDKILYPQTGTTKGEVMDYFQQAAPALLPHAAWRPATRKRW
VDGVGTDEAPGKAFFRKDLEDSAPSWIPRARLRHKTHSNTYPLVNDEAVLAWIAQVAALE
VHVPQWRFDSALEPSNPDRLVLDLDPGPGAGLEQCAEVALICREILEGMDLRSFPVTSGS
KGIHLYAGLDGKYSSDQISEVAKELAASLQRDHPQLVVASMKRSLRENKVLVDWSQNNAA
KTTVCPYSLRGRSRPTVAAPRTWREIEASGLRQLEFQDVLDRLEDGIDPLAPLAALGAPG
QEPDRLAAYRSKRDASQTPEPVPGQSAQLGQAAGSQKGSAPGFVIQEHHARRLHWDFRLE
HEGVLASWAVPKGPPMETGVQRLAVMTEDHPLSYASFEGRIPKGQYGAGEVSIWDTGTCT
IEKWREGKEAIAILQGKPSGGLGGIPRRFVLIHAPSMGGKDNWLLQLAKDQPAADSASGP
PEPDHRKPTEDLSLRPPRPMLAANGTATDISSTQGWSFEMKWDGYRAIGAVQDGVLSLLS
RNGHELTAVFPDLAELGSLLPDRSVLDGEIVALDEAGRPDFSLLERYVAAMRKKRTWQAR
AISIQYLLFDALQLPSASGEPEDLTALPYAERRRRLESMDLDHSRAKIPPAYDGTVADAV
QISQELGLEGIVAKECASPYEPGQRSGSWIKLKHEIHQEAIVIGWREGSGARASSFASLL
LAVPGREGLSYAGRVGTGFSDAQLAEISSRLEKLQRKTPAAKDVPASHQKDARWVSPKLV
GEVRCSEVTSAGLLRHPVWRGWRDDKDPQEVRWEPKDPALAENRKN
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcaaggagcaaaccgccaaagttgcggggcacgaactcaaggtcagcaatctg
gacaagatcctgtatccacagaccgggacgaccaagggcgaagtcatggattacttccag
caggccgcccccgccctgctcccgcacgccgcgtggcgcccggccacccgcaagcgctgg
gtggacggcgtcggcaccgatgaggcgccgggaaaggccttcttccgcaaggatctggaa
gattccgcacccagctggattccccgcgcgaggctcaggcataagacccactccaacacc
tacccgctggtcaacgatgaagctgtgctggcctggatcgcccaggtggcggccctggaa
gtccatgtgccgcagtggcgcttcgattccgccttggaaccgtcgaacccggaccgcctg
gtcctggaccttgatcccggccccggtgccggcttggagcaatgcgccgaagtcgccctg
atctgccgggagatcctggagggcatggatctgcgcagcttcccggtcacgtcgggttcc
aagggcatccacctgtatgcgggcctggacgggaaatacagctcggaccagatcagcgaa
gtggccaaggagctggccgcctcactgcaaagagaccatccgcagctggtggtcgccagc
atgaagcgctcgctgcgggagaacaaggtactggtcgactggagccagaacaatgccgcg
aaaaccaccgtctgcccgtactccctgcgcggccggtcccggcccaccgtcgccgcgccc
aggacatggcgggaaatcgaggcttccgggctgaggcagctggagttccaggatgtgctg
gaccggcttgaagacggcatcgacccgctggcgcctctggccgccctcggcgcgcccggc
caagaacctgatcgattggccgcctaccgctccaagcgcgatgcgtcgcagactcctgag
ccggtccccgggcaatccgcccagctaggacaggcggccggcagccagaagggttccgcg
ccgggtttcgtgatccaggagcatcatgcccgcaggttgcactgggatttccgtctggag
catgagggggtgctggcttcctgggcggtgcccaaggggccgccgatggaaaccggcgtc
cagcggctggcggtgatgaccgaggaccatccactgtcctatgccagctttgaaggcagg
attcccaaggggcagtatggcgctggagaagtatccatttgggatacgggcacctgcacc
atcgagaaatggcgcgaaggcaaggaagccatcgcgatcctgcagggcaagcccagcggc
gggctcggcgggatcccccggcgctttgtgctgatccacgctccaagcatgggcgggaag
gacaactggctgctgcagctggccaaggaccagccggcggcggacagcgcctcgggtccg
ccggaaccagatcaccggaagcccacggaggacctgtccctgcggccgccccgtccgatg
ctggccgccaatggcaccgccacggacatttccagcacccagggctggagcttcgagatg
aaatgggatggctatcgcgccatcggcgcagtccaggacggcgtcctctcattgctcagc
cgcaatggccatgagctcaccgctgttttcccggatttggctgaactcggttccctcttg
cctgaccggtcggtgctcgatggggaaatcgttgcattggatgaagctggcaggccggat
ttctcgctgctggaacgctacgtcgcagcgatgcggaaaaagcggacctggcaagcccgc
gccatcagcatccagtatctgctcttcgacgccctccagctgccctccgcgtcaggagaa
ccagaggacctcacggccctgccctatgccgaacgccgccgccggctggaatccatggac
cttgaccactcccgggccaagatcccgccagcctatgacggcacggttgccgacgcggtg
cagatcagccaagagctcggcctggagggaattgtcgccaaggaatgcgcgtcgccctat
gagcccgggcagcgcagcggaagctggatcaagctcaagcacgaaatccaccaggaggcc
atcgtcatcggatggcgcgaaggcagcggcgcacgggccagcagcttcgcctcattgctg
ctggccgtcccgggccgcgaggggctgagctacgcgggccgggtagggaccggtttcagc
gacgcccagttggccgagatcagcagccggctggagaagcttcaacgcaagacgccggcg
gccaaagatgtcccggcttcgcaccagaaggatgcccgctgggtcagccccaagctggtg
ggcgaagtgcgctgcagcgaagtgaccagcgccggattgctgcgccacccggtgtggcgc
ggatggcgggacgacaaggatccgcaggaggtccggtgggaacccaaggacccggcatta
gcggaaaacaggaaaaattga
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