Glaciecola nitratireducens: GNIT_0015
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Entry
GNIT_0015 CDS
T01632
Gene name
polA
Definition
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
gni
Glaciecola nitratireducens
Pathway
gni03030
DNA replication
gni03410
Base excision repair
gni03420
Nucleotide excision repair
gni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GNIT_0015 (polA)
03410 Base excision repair
GNIT_0015 (polA)
03420 Nucleotide excision repair
GNIT_0015 (polA)
03440 Homologous recombination
GNIT_0015 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gni03032
]
GNIT_0015 (polA)
03400 DNA repair and recombination proteins [BR:
gni03400
]
GNIT_0015 (polA)
Enzymes [BR:
gni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GNIT_0015 (polA)
DNA replication proteins [BR:
gni03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GNIT_0015 (polA)
DNA repair and recombination proteins [BR:
gni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GNIT_0015 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GNIT_0015 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Sds3
ANAPC15
Motif
Other DBs
NCBI-ProteinID:
AEP28175
UniProt:
G4QEE7
LinkDB
All DBs
Position
complement(15351..18149)
Genome map
AA seq
932 aa
AA seq
DB search
MMEKQSTSPLVLVDGSSYLFRAFHGLPPLTNSKGQDTGAIYGVVNMLRSLMTTYKPSHIA
VVFDAKGKTFRDDIYKEYKANRPPMPDELRSQIKPLHKIISAMGFPIIVEDGVEADDVIG
TLARQASEQGIECVISTGDKDMAQLVDQHVTLINTMTNTTMDVDGVTEKFGVPAELIIDY
LAMKGDKVDNIPGIPGVGDKSAVAMLNGIGGVKEIYANLDKIATLDFRGAKTMAAKIAQY
EEQAMLSYQLATIECDLKLEYEPTTLNMGEMDKPELQTLFAEYEFKRWLAEVSDNDSDVT
KASKPLSTDGESSAEDSAQSDNTSSQSFDKAKYELVLTQAQLDEWISKINAAEYYAVDTE
TTSVDYMQAELVGLSFATSENEACYIPVAHDYPGAPEQLERDNVLAQLKPILEDKSAKKI
GQHIKYDKNVLANYDISLQGILSDTMLASYVLNSVATRHNMDSLSLKYLGHNTIHFEDIA
GKGAKQITFNQIALEEAAPYAAEDADVTLRLHKALQALLQDKGELPSVLNDIEVPLSSVL
AKMEQNGVLIDSQLLGQQSQTLAARIMDLEKEVHDLAGEAFNLGSTKQLQHILFEKMSLP
VVKKTPKGAPSTSEEVLQDLALEYELPKKIMEYRGLTKLKNTYTDKLPKMIHHRTGRVHT
SYHQAVTATGRLSSTDPNLQNIPIRTAEGRQVRQAFIARPGYKVVAADYSQIELRIMAHL
SKDKGLVSAFSEGKDIHSATAAEVFDVPLEQVSVNERRSAKAINFGLIYGMSAFGLSKQL
NISRYDAQQYMDLYFERYPGVLTYMESTREGAKETGYVSTVFGRRLYLPDIKASNAMRRK
GAERAAINAPMQGTAADIIKKAMIDVDAWINDIKDEDILMIMQVHDELVFEIKEDRVDEY
VAKIKSLMEDTVKLDVPLVVDVGIGNNWDEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaaacaatcaacaagtccgttagtcctagttgacggttcctcttatttattc
agagcctttcacggcctgccccctcttacaaattcaaaaggccaagacacaggcgcgatt
tatggcgtagtcaatatgctgcgtagtttaatgaccacatataagcccagtcatattgct
gtggtttttgacgcgaaagggaaaacgtttagagacgatatttataaagaatacaaagcc
aaccgcccacccatgccggatgaacttcgttcgcaaattaaacctttgcacaaaattatt
agcgcgatgggctttccaattattgtggaagatggagtagaagccgacgatgttatcggt
acattagcgcgccaagcatcagagcaaggaattgagtgtgtcattagtaccggtgacaag
gacatggcccaactcgtcgatcaacacgtcacgcttatcaataccatgacaaataccacc
atggatgtcgacggggtgactgaaaaatttggtgtgcccgccgaactgatcattgattat
ttagcaatgaaaggcgacaaagtagacaacattccaggcattcccggtgttggcgacaag
agtgcagtcgcaatgctcaacggaattggcggcgtaaaagagatttatgcaaatctcgat
aagatagcgacactagactttcgcggcgccaagacgatggccgcaaaaatagcgcagtat
gaagaacaagcgatgctttcttatcaattagccaccattgaatgtgatttaaagcttgaa
tatgaaccgaccactctgaacatgggtgaaatggacaagcctgaactgcagacattgttt
gccgaatatgagtttaaacgttggcttgccgaggttagtgataacgacagcgacgttact
aaagccagcaagccgctatccacagacggtgagtcaagtgccgaggacagcgcgcaaagc
gacaacacgtcatcgcagtctttcgataaggctaaatatgaactcgtgctaacacaagca
caactagatgaatggattagcaaaatcaacgctgcagaatattatgcggttgatactgaa
actactagtgttgactatatgcaggctgaactagttggactgtcattcgccaccagcgaa
aacgaagcctgctacattccagttgcgcatgattatcctggcgcaccagaacaacttgag
cgcgacaacgtgcttgcccaacttaaaccaatattggaagataagtctgcgaagaaaatt
ggtcagcacatcaaatacgacaaaaacgtgctcgccaattacgatatttccctgcaaggg
attttatccgacacaatgctggcgtcatatgtactaaacagtgtggctacacgccataac
atggacagcctgtcgctaaaatacctcggccataatacaattcattttgaagacattgcc
ggcaaaggcgcgaaacaaattacgtttaatcaaattgcattagaagaagctgctccctat
gcggccgaagatgccgatgtgacgcttcgcctgcacaaagcactgcaggctcttctgcaa
gataaaggagaactcccttcagttttgaacgatattgaagtgcctttgtcctcagtattg
gcaaaaatggaacaaaacggggtgttgatcgacagtcagctattaggtcagcaaagtcaa
acattagccgcgcgtattatggatcttgaaaaagaggttcatgatttagccggtgaagca
ttcaacttgggctcgacgaaacagcttcagcacattctttttgaaaaaatgagtttaccg
gtagtgaagaagaccccaaaaggcgctccctctacatcagaggaagtgctgcaagacctt
gctttagaatatgaacttccgaagaagataatggagtatcgtgggctaacgaaactcaaa
aatacctataccgacaagcttcccaagatgatccatcatcgaaccggcagagtgcacacc
tcttatcaccaagcggtgacggcaacgggtcgcctttcttctaccgatcctaacttacag
aatatcccaattagaacagcagaaggaagacaggttcgccaagcattcattgctcgccct
ggctataaagttgtggctgcagattacagtcaaattgagctacgcattatggctcattta
agtaaagataaaggcttagtgagtgcgttttcagaaggcaaagatattcacagtgcgacc
gctgcagaagtatttgatgtgccgctagaacaagtgtctgttaatgaaagacgcagcgcc
aaggccattaactttggtttgatatacggtatgtcagcctttggcctatctaaacaactg
aatatttcgcgctatgatgcgcaacaatatatggacttatattttgaacgttatcctggt
gttttgacctatatggaatctacgcgagaaggtgcgaaagaaacaggctatgttagtacc
gtgtttggccgcagattgtatcttcctgatataaaggcaagcaatgcaatgcgtagaaag
ggtgccgaacgcgctgcaatcaatgcgccgatgcaaggcacagcagcagatattattaaa
aaagcgatgatcgatgttgatgcttggattaacgacatcaaagacgaagatattttaatg
attatgcaggtgcacgatgaattagtttttgaaataaaagaagatcgcgttgacgaatat
gtggcaaaaataaaatcgttaatggaagacactgtcaaacttgacgttccgctagtggtc
gacgttggtatcggtaataattgggatgaagcacattaa
DBGET
integrated database retrieval system
