Gemmata obscuriglobus: C1280_05335
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Entry
C1280_05335 CDS
T05475
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gog
Gemmata obscuriglobus
Pathway
gog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1280_05335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gog03019
]
C1280_05335
Enzymes [BR:
gog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1280_05335
Messenger RNA biogenesis [BR:
gog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1280_05335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AWM36501
UniProt:
A0A2Z3GVC9
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All DBs
Position
complement(1325347..1326660)
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AA seq
437 aa
AA seq
DB search
MPFKALGLHPLIVRATQDLGYQEPTPVQAGAIPAALEGRDVLATAQTGTGKTAGFLLPIL
HRLLAQPRGGTRALVLSPTRELAEQIQDVCTGLAKHTPIQSALVVGGRPEGPQERAFRAG
VDIIVATPGRLLDMLQRNVAKLDRATTLVLDEADSLFDMGFLPDVKRIMARMPARKHTLL
FSATMPPVIGQLANEVLRNPAVVQIGRRSSTAVGITQAAYPVPTHLKTALLRHLLRETEM
PSVLVFTRTKFGAKKIARQVAADGFTVAELHSNRTPSQRTAAMEGFRQGKFQVMVATNIA
ARGLDVNHITHVISTDVPDVPEDYVHRIGRTGRAGATGDAFILFSRDEEDSLARIERQVG
QRLPRVTLPDFDYTLAAPPPQPNGAKPPRGGGGSRPAQSAKPKSPKRPQGQGQPQPKRSN
TPKGRSGGGSTRPGPRK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgccgttcaaagccttgggtcttcatccgctgatcgtccgcgccacccaggacctcggg
taccaggagccgacgcccgtccaggccggcgcgatcccggcggcccttgaaggccgcgac
gtcctcgcgaccgcgcaaaccggcaccgggaagaccgcggggttcctgctgccgatcctg
caccggctgctcgcccagccgcgcggcggaacgcgcgccctggtgctgtccccgacccgc
gaactggccgagcaaattcaggacgtgtgtacgggcctcgcgaagcacacgccgatccaa
tcggcgctggtggtcggcggccggcccgaggggccgcaggagcgggccttccgcgcgggg
gtggacatcatcgtcgccacccccgggcggttgctcgacatgcttcagcggaacgtcgcg
aagctcgaccgcgccaccacactcgtcctcgacgaggccgacagcctgttcgacatgggc
ttcctgcccgacgtgaaacggatcatggcgcgaatgccggcgcggaagcacacgctgctc
ttctccgcaacgatgccgccggtgatcggccagctcgccaacgaggtgctgcgcaacccc
gcggtggttcagatcgggcgccgcagttccacggccgtgggcatcacccaggccgcgtac
ccggttcccacgcacctcaaaaccgccctgctccgtcacctgctgcgcgagacggagatg
ccgtcggtgctggtgttcacgcggaccaagttcggggccaagaagatcgcccgccaggtg
gccgcggacggtttcacggtagccgaactgcacagcaaccgtaccccgtcgcagcgcacc
gccgcgatggagggcttccgccagggcaaattccaggtgatggtggcgaccaacattgcc
gcccgcgggttggacgtgaaccacatcacgcacgtcatcagcacggacgtaccggacgtg
cccgaagactacgtccaccggatcggccgcaccggccgcgccggcgcgaccggcgacgcg
ttcatcctgttctcgcgcgacgaggaggactcgttggcccggatcgaacgtcaggtcggg
cagcggctcccgcgcgtcaccctcccggacttcgattacacgcttgcggccccgccccca
cagccgaacggcgcgaagccgccacgcggcgggggcggttcacgcccggcgcaaagtgcc
aagccgaaaagtccgaaacggccgcaaggtcaggggcaaccgcaaccgaaaagaagtaac
acgccgaagggacggtcgggaggaggatcgacacgaccgggtccgcgaaagtga
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