Gamma proteobacterium HdN1: HDN1F_10550
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Entry
HDN1F_10550 CDS
T01300
Symbol
uvrB
Name
(GenBank) Helicase subunit of the DNA excision repair complex
KO
K03702
excinuclease ABC subunit B
Organism
gpb
Gamma proteobacterium HdN1
Pathway
gpb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDN1F_10550 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpb03400
]
HDN1F_10550 (uvrB)
DNA repair and recombination proteins [BR:
gpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDN1F_10550 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HDN1F_10550 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
AAA_33
AAA_16
AAA_5
Kinesin
Motif
Other DBs
NCBI-ProteinID:
CBL44638
UniProt:
E1VIJ6
LinkDB
All DBs
Position
1318894..1320924
Genome browser
AA seq
676 aa
AA seq
DB search
MSATEKHRFQISSTYKPAGDQPEAIRQLVDGLESGLSHQTLLGVTGSGKTFTIANVIEAV
QRPTLVLVHNKTLAAQLYGEFKEFFPNNAVEYFVSYFDYYQPEAYVPSSDTYIEKDSSVN
DHIEQMRLSATKALMERSDVIIVATVSCIYGLGDPATYLKMVLHLDRGDAMEQRTLLRRL
AELQYTRNEMDFRRATYRVRGDVVDIFPAESDAEAIRVELFDDEIENLSFFDPLTGAILR
RVPRATVFPKTHYVTPRETMLGAMEAIKAELRLRLDELSGAGKLIEHQRLGERTRFDLEM
MQELGYCNGIENYSRHLSGKPQGEPPASLFDYLPANALLVIDESHVTLPQLGAMYRGDRS
RKETLVQYGFRLPSALDNRPLRFDEWEARAPQMIFVSATPAQYEAEHQGQVVEQVVRPTG
LVDPLIEVRPASHQVDDLLERIRERVAVGERVLVTTLTKRMAEDLTEFFNEQNVKVRYLH
SDIGTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAVLDADKEGFLRSERSLIQ
TIGRAARNVNGKAILYADVVTGSMRRAIDETERRRAKQLLFNEVHGITPRSVQKPVDDIL
EGAYRAPASAGGRGLRKVAEAAPVYDLAELANPRKASTVLKELETRMLKHAANLEFEQAA
KLRDEIKRLRDATFIS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgactgaaaagcatcgctttcagatttcatctacctataagccagcgggagac
cagccggaggcgattcgtcaattggtagacggccttgaaagcgggttgtcccatcagacc
ttattgggggtgaccggttcagggaagacgttcacgattgcgaatgtgattgaggcggtg
cagcgcccaacccttgttttggtacataacaaaacacttgcggcgcagttgtatggagaa
tttaaggagttttttcctaataacgcggtggagtactttgtctcctactttgactattat
cagcctgaagcttatgtaccgtcgtcggatacttatattgagaaagattcttcggtaaac
gatcacattgagcaaatgcgcctctctgcgacgaaagcgctgatggagcgctccgacgta
attatcgtggctacggtttcctgtatttatggtttgggggatccggccacttacctaaaa
atggtgttgcatctagatcgtggtgacgcgatggagcagcgtactttattgagaaggctg
gcggagctgcagtatacccgtaatgaaatggattttcggcgggcaacctatcgggtgcga
ggggatgttgttgatatctttcctgctgagtcggatgcagaagccattcgggtcgagctg
tttgatgatgagattgagaacctgagcttttttgacccgctcaccggcgccattctgcgt
cgcgtgccgcgtgcgactgtgtttccaaagactcattatgttacgccgcgcgaaaccatg
ctcggtgcgatggaggctatcaaagcggagctacgtttacgtttggatgagctgagtggc
gcaggtaagctgattgagcatcagcggcttggcgaacgtacgcgctttgatcttgaaatg
atgcaggagctaggctattgcaatgggattgaaaattactcgcgacacctgtctggtaag
ccgcaaggtgagccgcctgcaagtttgtttgactatttgcctgctaacgcattgttagtg
attgatgaatcgcacgttacgctaccgcagctcggtgcaatgtatcgaggagatcgctcg
cgtaaggaaaccctcgtgcaatatggttttcgcttgccttcggcgttggataaccggcct
ttgcgttttgacgagtgggaagcacgggcacctcaaatgatctttgtttccgctacgcca
gcgcagtatgaggcagagcatcaggggcaagtggtagagcaggtggtgcggccaacgggc
ttggtagatccgctcatcgaggtgcgccctgcatcgcatcaggtggacgatctgttggag
agaattcgtgagcgggtagcggttggagagcgcgtactggtaacgacgctcaccaagcgc
atggcggaagacctcacggaatttttcaacgaacaaaacgtgaaagtgcgctatttgcac
tctgatattggaactgttgagcgggtggagatcatccgcgatttgcgcctcggggtgttt
gatgtgttggtgggcatcaatttgctgcgtgaaggtttggatatgccagaagtttcgctt
gttgcagtgttggatgcagataaagaaggttttctgcgctccgagcgttcgttgatacag
accattggccgggcagcgcgtaacgtcaatggtaaagcaattctctacgcggacgtcgtg
acagggtccatgcgacgtgcgatagatgaaaccgagcggcggcgcgctaagcagctactc
tttaatgaggtgcatggcattacaccaagatcggtgcaaaaaccagtcgatgacatactg
gaaggtgcttatcgtgcgccggcgtccgcaggtgggcgcggtttgagaaaggtagctgag
gcggcccccgtgtacgatcttgccgagctcgcaaatccacggaaggcttctacggtactt
aaagagctagagactcgaatgcttaagcatgctgcaaatcttgagtttgaacaggccgca
aaattgcgtgacgagattaaaaggttgcgagatgctacctttatttcgtga
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