Gossypium raimondii: 105798918
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Entry
105798918 CDS
T04129
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105798918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105798918
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105798918
mRNA degradation factors
5'-3' decay
Decapping complex
105798918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Motif
Other DBs
NCBI-GeneID:
105798918
NCBI-ProteinID:
XP_012484615
UniProt:
A0A0D2STW4
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Position
9:29950488..29959506
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AA seq
1395 aa
AA seq
DB search
MASSGNPNPQPQIGGGSGGGGGSGGFDLNKLFKPSSSPMLQHQHLQDMNVMATPPSPNPN
TTNLTTSPSFPAQLSTPPPPPYLTPSSSYPPPTRPYPFHHQYLHYPPPPQHLPPLHPHPN
PTGPIPYHPQPQLPTTPTSGNDILMAFFGTQSQSQAPAPVPSAPPLNMNVNPSAPSPSPS
SPSPARLLSSKSPKGRHLFGTNLLYDIHVRLPSEVQPQLEVTPITKYASDPGLVLGRQIA
VNRNYICYGLKLGNIRILNINTALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRVFVW
RINEGPDDEDKPQIFGKVVIAIQIVGQEESKHPRVCWHPHKQEILMVAIGNRILKIDTMK
VGKLEGFTAEEPLNCSVDKLIDGVQFVGKHDGELTELSMCQWLTTRLASASVDGTVKIWE
DRKPLPLAVLRPHDGHPVYSATFLTAPHRPDHIVLITGGPLNREVKIWASSGEEGWLLPS
DGESWQCTQTLELRCSAESEVDNAFFNQVVALPHAGLFLLANAKKNAIYAVHIDYGPNPA
ATCMDYIAEFTVTMPILSLTGTSDSLPGGDYTVQVYCVQTQAIQQYALDLSQCLPPPLEN
ADLDKTDSNAAHVFDAMNSDVSASLELSHGYKPSPSILVSCISSSSSESAAVVSCTQNLA
SSDVTFISESAVSGIESKPSALLSSSSAENMHSASPPGLSRKSSGFRNPSVDHVNHSAHD
SVDHNVDTVKENKAEMPYSGGHLQKGEDIAQNDISTVPGPHTVFKHPTHLVTPSEILSTM
ASSTENAQISQVISDGEATVEDVVKNDAESIEVEVDNLGETRHCQTNETKCPQGPHTTVT
DNKEKAFYSQASDLGIQMARDFCAKSYSVEGAQQANLMGVSVQEDKLTNTGDGDDQNVIK
DVPPKVSETDTAVTVSASPASAKGKKLQKKNSQVSIASSPSASPYNSTDSSNEPGCSSQA
LSADAFLPQLLAMQDLLEKSLSMQKEMQKQMNTIVSAPVNKEGKRLEASLGRSIEKAVKA
NTDALWARFQDENAKQEKLERDCMQQITNLITNCLNKDLPAMFEKSLKKEIAAVGPVVAR
AISPILEKSISSAITESFQKGVGERAVNHLEKSVSSKLEVTMARQIQAQFQTSGKQALQD
ALRSSLETSVIPAFEMSCKSMFEQIDVAFQRGLMEHTATAQQQFENSHSSLAVALKDAIN
SASSITQSLCGEMANAQRKLLAIAAAGGSSKAGNPLVTQLSNGPLAHLHEMQPEAQLDPT
KELSRMIAEKKYDEAFTSALHRSDVSIVSWLCSQVDLQGILSMKPCSLSQGLLLALFQQL
ACDINKETSRKLAWMTDVAVAIIPSDPTIAVHVVPIFRQVSQIVDHLQSMSTTSASESAC
IRVLKFVINSVLSGK
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctgggaatcccaatcctcaaccacaaattggcggtggaagtggaggtgga
ggcggcagtggagggttcgatttgaacaaactgtttaagcccagttccagcccaatgctg
cagcatcagcatctccaagacatgaacgtcatggcaactcctccaagtccaaatcctaac
actaccaacctgactacatccccatctttcccagcccaactgtcaacgccgcctccacct
ccctatttaacgccttcctcctcttaccctccgcctactaggccctaccctttccatcac
cagtaccttcactaccctcctcctcctcaacacctaccccccttgcatcctcatcctaat
cctactggacctattccttatcatccccaaccccaactacccaccactcctacttctgga
aatgacattttgatggccttttttggcactcagtctcagtcacaagctcctgctcctgtc
ccttctgccccacctcttaatatgaatgtcaacccatctgccccttcgccctctccctcc
tctccctcacctgcccgactgttgagcagcaagtcccccaagggaaggcatctttttggg
accaatctcctttacgatattcatgtcaggctgcccagtgaagtacagccccaacttgag
gtcactcccattaccaagtatgcttctgatcctggccttgttcttggtcgtcagattgct
gttaataggaattacatttgctatggtcttaagcttgggaatatccgtatcctcaacatc
aacaccgccctccggtccttgcttcgtggccacactcagagagtgacagatatggctttt
tttgctgaggatgtccaccttttggccagtgcaagtgtcgatggccgggtttttgtatgg
aggatcaatgaaggccctgatgatgaagataagccgcaaatttttggcaaagttgttatt
gccattcagatcgtggggcaagaagaatcgaaacatccacgagtctgttggcatcctcac
aaacaagagattttgatggttgctattggaaatcgtatcctgaaaattgatacaatgaaa
gttggaaaacttgaagggtttacagcagaagaacctcttaattgctctgttgataagctt
attgatggggttcagtttgttggtaaacatgatggtgagcttacagagttgtcaatgtgc
caatggttgactacccgtttagcttcagcttcagtagatggcacggtgaaaatttgggaa
gatcgtaagcccttaccacttgcagtgttgaggccacatgatggacatcctgtttactca
gcaacattcttgactgccccgcatcgccctgaccatatagttcttatcacaggaggccca
ctaaaccgtgaagtgaagatatgggcctcttcaggtgaagagggctggttgttgcccagt
gatggtgaatcatggcagtgtacccaaacattggaattgaggtgttctgctgagtctgag
gttgacaatgcattctttaatcaagttgtggcactgccccatgcaggcctgtttctgctt
gcaaatgccaagaagaatgccatatatgctgtgcacatagactatgggcctaatccagct
gcaacttgcatggattatatagctgaattcactgtcacaatgcccatattgagtctcact
ggaacaagtgatagtttgccaggtggagactataccgtccaagtctactgcgttcaaaca
caggccattcagcaatatgctttggacttgtctcaatgcctgccaccacccttggaaaat
gcagacttggataaaactgattctaatgctgctcatgtttttgatgccatgaactctgat
gtttctgcttctctggaattatctcatggatataaaccaagcccttcaattttggtgtcg
tgtataagctccagtagctctgaaagtgcagcagtcgtgagctgtacgcaaaatttagct
tcttcagatgttactttcatatctgagagtgctgtgtctggcattgaaagtaagccaagt
gctttgctgtcttctagtagtgccgaaaatatgcacagtgcatctcctccagggttatca
cgaaagtcttctggttttagaaatccaagtgttgatcatgttaaccactcagcacatgat
tctgttgaccacaatgtagatacagtcaaagagaataaggctgaaatgccctactctggt
ggtcacctgcagaaaggtgaagatattgcccaaaatgacatttcaactgttcctggtcct
catacagtgttcaaacatccaacccatctggtaacaccatcagagatactgtctaccatg
gcttcatcgacagagaatgctcagattagtcaggttattagtgacggtgaggcaacagtt
gaagatgttgtcaagaatgatgctgaaagcatagaggtagaagttgacaatcttggtgag
acaaggcattgtcaaactaatgaaactaaatgtccacaaggccctcatactactgttaca
gataacaaagaaaaggcattctactctcaggcatcggatcttggcattcagatggccaga
gatttttgtgccaaaagttatagcgttgagggagctcaacaagctaatctcatgggtgtt
tctgttcaagaagataaacttactaatactggtgatggggatgaccagaatgtgattaaa
gatgtccctccaaaggtcagtgaaactgacactgctgtcactgtttctgcatctccagct
tctgctaaagggaaaaagctgcaaaagaaaaattctcaagtatctatcgcatcttcccct
tcagcaagcccatataattccacagattcatctaatgaaccagggtgtagttcccaggct
ctgtcagctgatgcttttttgccccaattgctagccatgcaggacttgcttgagaagtcc
cttagcatgcagaaggaaatgcagaagcagatgaacacaattgtctctgctcctgttaac
aaagaagggaaaagattggaagcatccttgggcaggagcattgagaaagctgtaaaggca
aatacagatgctttgtgggcccgtttccaggatgaaaatgcaaagcaagagaagttagaa
agagactgcatgcagcagataacaaacttgatcaccaactgtttaaataaggacttgcca
gccatgtttgaaaaatccttaaagaaggaaatagctgcagttggccctgttgtggctcgt
gctattagtcctattctggagaaaagtatatcttctgctattacagagtcattccagaaa
ggagttggagagagggctgtgaatcatttagagaagtcagtcagttcaaaacttgaagtg
acaatggccaggcaaattcaagcacaatttcaaacttctggaaagcaagcacttcaggat
gcactaaggtctagcttggaaacgtctgttattccagcatttgagatgtcatgcaaatct
atgttcgagcaaattgatgtcgcatttcagagagggctaatggaacacacagctactgct
cagcagcaatttgaaaattcacattcttcccttgccgttgctttaaaggatgctattaat
tctgcaagttcaatcacacaaagcttatgtggagaaatggccaatgcacaacgaaaactt
ctagctatagcagcagcaggtggcagctccaaggcaggaaatcccttggtgacacaattg
agtaatgggccattggctcatctgcatgagatgcagcctgaggcacagttagatccaaca
aaagagttgtcaagaatgatagctgagaagaaatatgatgaagcattcacctctgccttg
catagaagtgatgtctcaatagtttcctggttgtgttctcaggttgatctacaagggata
ttgtcaatgaaaccatgttcactgagccaaggattattgctggcactttttcagcaactg
gcttgtgatatcaacaaggaaacaagtagaaagctggcatggatgactgatgtagcagtt
gccataatcccatcagatccaacaattgcagtgcatgtggtaccaatctttaggcaggtg
tctcagatagtggatcatctacaaagcatgtccactacatctgcctcagaatccgcctgc
atcagggttcttaagtttgtcataaacagtgtgttaagcggtaaatga
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