Christiangramia salexigens: LPB144_11090
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Entry
LPB144_11090 CDS
T04586
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
grl
Christiangramia salexigens
Pathway
grl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
grl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPB144_11090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grl03400
]
LPB144_11090
Enzymes [BR:
grl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB144_11090
DNA repair and recombination proteins [BR:
grl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPB144_11090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
UB2H
NDUF_C2
Motif
Other DBs
NCBI-ProteinID:
APG60919
UniProt:
A0A1L3J723
LinkDB
All DBs
Position
complement(2465532..2468921)
Genome browser
AA seq
1129 aa
AA seq
DB search
MSTNLIAQNFAQSPQQQELQNAISNSENKTDKLHLKGLVGSALSFVVANAFKETDRPYLL
IFNDKEEAAYYLNDLEQLVGEKNVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKK
PAIIVTYPDALFEKVVTRKELDKSTLKISVGDELSIDFVNEVLFEYQFKRVDFVTEPGEF
SVRGGIIDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTDKKKKISVMPNVENKHLDE
VRESFLKYISAKTIVFIKNLDLLSAQADKLFKKAEEAFKELSEEVKHSAPKELFCNGELI
KKQLLDYSAIELSNQAYLNPKKQIEFHTKPQPSFNKQFELLIENLIENQEAGYSNFISCV
SQQQAKRFHDIFDDQEKQVKYQTPVFSMFQGFIDEDSKTVCYTDHQIFERYHKFNLKNGY
AKKQAITLKELTNLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGERDILYLSI
HSLHKISKFNGKDGKPPKIYKLGSNAWKNLKKKTKARVKHIAYDLIKLYAKRRLEKGFKF
DPDSYLQHELEASFMYEDTPDQSSATAAVKEDMENERPMDRLVCGDVGFGKTEVAIRAAF
KAVDNNKQVAVLVPTTILAFQHHQTFSERLKDFPVRIDYLNRFRTAKERKETLKDLEDGK
VDIIIGTHQLVNKTVKFKDLGLLIVDEEQKFGVAVKDKLKTIRENVDTLTLTATPIPRTL
QFSLMAARDLSTITTPPPNRYPIETNVIRFSEETIRDAISYEIQRGGQIFFIHNRVENIK
EVAGMIQRLVPDAKIGVGHGQMEGKKLEKLMLSFINGEFDVLVSTTIVESGLDVSDANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYAVMTEDARKRITALEQFSELGSGF
NIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKENEFRDLYAETEDLEH
KDFVKDTQIDTDFELLFPDDYINNITERLNLYTKLNELKNEEELQKFEDELVDRFGELPT
QAVDLLNSVRIKWVASHIGLERVIMKKGKFVGYFIADQKSRFYQTSNFTKILQYVQRHPQ
TCKMKEKETRNGLRLLLTFEKINSIDKALKVLQPLDFREKAEVEVSQSN
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaaatcttatcgcccaaaattttgcacaatccccgcaacagcaggaattgcaa
aatgctatatccaattctgaaaataaaactgataaattacatttaaaaggcctggtaggt
tctgccctgtctttcgttgttgcaaatgccttcaaggagacagatcgcccctacctgctt
atttttaatgataaggaagaggctgcttactacctgaatgacctggaacaacttgttgga
gaaaaaaatgtgcttttctatccaggaagttaccgtaggccatatcaaattgaagaaaca
gacaatgctaatgttttactacgagctgaagtactcaacagaataaactcgcgtaaaaaa
ccggcaatcattgtcacctatccggatgcgctttttgaaaaagtggtcacaagaaaagaa
cttgataaaagtactcttaagatctctgttggcgatgagttatctatagactttgtaaat
gaagtactctttgaatatcagttcaaaagagttgattttgttaccgaaccgggagagttc
tccgttcgtggtggtatcatcgatgtcttttcctttagtcatgatgaaccttacaggatc
gagttttttggtgatgaggtagacagcatccggacctttgatgtagaaactcagctttct
acagataagaaaaagaagatctcggtaatgccgaatgtggaaaacaagcatttagacgag
gtcagggaaagttttctaaaatatatctcagccaagaccattgtttttattaagaatctt
gatctgctttcggctcaggccgacaagctgttcaaaaaggctgaggaagcttttaaggaa
ctttctgaggaagttaaacatagtgccccaaaagaattattctgtaacggtgaactcatc
aaaaaacaattgctggattattctgcaatagaattgagcaatcaggcctatctgaatcca
aagaagcagatcgagtttcataccaagcctcaaccatccttcaacaaacagtttgagctg
ttaattgaaaatctgatagaaaatcaggaagcaggatacagcaatttcattagttgcgtt
agccaacaacaggccaaacgttttcacgatatctttgacgatcaggagaaacaggtaaaa
taccaaactccggtcttttcaatgtttcaggggtttatagacgaagactccaaaacggtt
tgctataccgaccaccaaatatttgagcgttaccataaattcaatttaaagaatgggtac
gctaagaaacaggcaataacattaaaggaattgaccaatctggagatcggggattatgta
actcatatagatcacggaattggaaaattcggcggacttcagaaaatagatgtagaaggc
aagaaacaggaagccataaagctaatttacggcgaacgggatattctttacctaagtata
cattcgctgcataagatctccaaattcaatggaaaggatgggaaacccccaaagatctat
aagctgggtagcaatgcatggaaaaaccttaaaaagaaaaccaaagcccgggttaagcat
attgcctacgatttgataaagctgtatgctaaaagaaggcttgaaaagggctttaaattt
gaccctgactcctatttgcaacatgagctggaagcttcttttatgtatgaagacactcca
gatcaaagttcggctaccgctgcggtaaaagaagatatggagaatgaacggcctatggac
aggctggtatgcggggatgtaggtttcggaaaaacggaagttgccattcgtgctgccttt
aaagctgtggataataataagcaggtcgctgtattggtgccaacaactattctggctttc
cagcatcatcaaacattttcagaaagacttaaagatttcccggtacgtattgattactta
aaccgatttagaactgcgaaggaacgtaaagaaacccttaaagatcttgaagatgggaaa
gtggatatcatcataggaacccatcaattagtaaataaaactgtgaaatttaaagatctt
ggcctactcatcgtagatgaggaacaaaaatttggggttgccgttaaggataaattgaaa
acgatcagggagaatgtggatacccttaccctaactgccactccaattccaagaacactt
cagtttagccttatggcggcgagagacctttctaccattactactccgccaccaaacaga
tatccgatagaaaccaatgtgatccgtttttcagaagagaccatcagagatgcgatctcc
tatgaaattcaacgtggaggtcagatcttcttcatacataacagagtagagaacatcaag
gaggttgccggaatgattcagcgtcttgtgccagatgcaaagataggggttggtcacgga
cagatggaagggaagaaactggaaaaactaatgctgagcttcattaatggagaatttgat
gtgctggtttccacaaccattgtagaaagcggtcttgatgtaagcgatgcgaatacgatc
tttatcaataatgccaataactttggtctttctgatctgcaccagatgagaggacgcgtt
ggacgaagcaacaagaaggctttttgttacttcataacgccaccatatgctgtaatgaca
gaagatgccaggaaaaggataacggctcttgagcagttctctgaacttggaagcggcttt
aatatcgccatgaaagatcttgaaattagaggtgctggtgacctgctggggggagaacag
agtggtttcatcaacgacattggttttgatacttatcagaagatcctgaatgaagccatc
gaggaattaaaagaaaatgaattccgcgatctgtatgccgaaactgaagatctggagcac
aaggattttgtaaaggatacgcagatcgataccgattttgagctgttattcccggatgat
tatatcaataacatcacagaacgtcttaatctttacaccaagctgaatgagcttaaaaat
gaagaagaacttcagaagttcgaagatgaattagtagaccgattcggggaattgccaact
caggcggtggatcttttaaattcggtaaggatcaaatgggttgcttcccatattggcctg
gaaagggtgatcatgaaaaaaggaaaattcgtgggttactttatcgccgaccaaaaatcc
agattttaccagacttctaatttcacaaagatcctgcagtatgtccaaagacatccgcag
acctgcaagatgaaagaaaaggaaaccagaaatggcctcaggctattgcttacgtttgaa
aagataaattctatagacaaagcgcttaaggtcttgcaacctttggatttcagagaaaaa
gcagaagttgaggtaagccagagcaactaa
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